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Correlation between polar surface area and bioferroelectricity in DNA and RNA nucleobases.

Authors :
Yam SC
Zain SM
Sanghiran Lee V
Chew KH
Source :
The European physical journal. E, Soft matter [Eur Phys J E Soft Matter] 2018 Jul 18; Vol. 41 (7), pp. 86. Date of Electronic Publication: 2018 Jul 18.
Publication Year :
2018

Abstract

We have performed computational molecular modelling to study the polarization switching and hysteresis loop behaviours of DNA and RNA nucleobases using the PM3 semi-empirical quantum mechanical approaches. All the nucleobases: adenine (A), thymine (T), guanine (G), cytosine (C), and uracil (U) were modelled. Our study indicates that all the nucleobases exhibit a zero-field polarization due to the presence of polar atoms or molecules such as amidogen and carbonyl. The shape of polarization P versus an applied electric field E hysteresis loop is square, implying typical ferroelectrics behaviour. The total energy U as a function of an applied electric field E exhibits a butterfly-like loop. The presence of zero-field polarization and ferroelectrics hysteresis loop behaviours in nucleobases may support the hypothesis of the existence of bioferroelectricity in DNA and RNA. We also found an interesting relationship between the minimum electric field required for switching [Formula: see text] and the ratio of the topological polar surface area (TPSA) to the total surface area (TSA) of a nucleobase. In particular, the [Formula: see text] of a nucleobase is inversely proportional to the TPSA/TSA ratio. This work may provide useful information for understanding the possible existence of ferroelectricity in biomaterials.

Details

Language :
English
ISSN :
1292-895X
Volume :
41
Issue :
7
Database :
MEDLINE
Journal :
The European physical journal. E, Soft matter
Publication Type :
Academic Journal
Accession number :
30014219
Full Text :
https://doi.org/10.1140/epje/i2018-11696-5