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Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets.

Authors :
AlKhalifah N
Campbell DA
Falcon CM
Gardiner JM
Miller ND
Romay MC
Walls R
Walton R
Yeh CT
Bohn M
Bubert J
Buckler ES
Ciampitti I
Flint-Garcia S
Gore MA
Graham C
Hirsch C
Holland JB
Hooker D
Kaeppler S
Knoll J
Lauter N
Lee EC
Lorenz A
Lynch JP
Moose SP
Murray SC
Nelson R
Rocheford T
Rodriguez O
Schnable JC
Scully B
Smith M
Springer N
Thomison P
Tuinstra M
Wisser RJ
Xu W
Ertl D
Schnable PS
De Leon N
Spalding EP
Edwards J
Lawrence-Dill CJ
Source :
BMC research notes [BMC Res Notes] 2018 Jul 09; Vol. 11 (1), pp. 452. Date of Electronic Publication: 2018 Jul 09.
Publication Year :
2018

Abstract

Objectives: Crop improvement relies on analysis of phenotypic, genotypic, and environmental data. Given large, well-integrated, multi-year datasets, diverse queries can be made: Which lines perform best in hot, dry environments? Which alleles of specific genes are required for optimal performance in each environment? Such datasets also can be leveraged to predict cultivar performance, even in uncharacterized environments. The maize Genomes to Fields (G2F) Initiative is a multi-institutional organization of scientists working to generate and analyze such datasets from existing, publicly available inbred lines and hybrids. G2F's genotype by environment project has released 2014 and 2015 datasets to the public, with 2016 and 2017 collected and soon to be made available.<br />Data Description: Datasets include DNA sequences; traditional phenotype descriptions, as well as detailed ear, cob, and kernel phenotypes quantified by image analysis; weather station measurements; and soil characterizations by site. Data are released as comma separated value spreadsheets accompanied by extensive README text descriptions. For genotypic and phenotypic data, both raw data and a version with outliers removed are reported. For weather data, two versions are reported: a full dataset calibrated against nearby National Weather Service sites and a second calibrated set with outliers and apparent artifacts removed.

Details

Language :
English
ISSN :
1756-0500
Volume :
11
Issue :
1
Database :
MEDLINE
Journal :
BMC research notes
Publication Type :
Academic Journal
Accession number :
29986751
Full Text :
https://doi.org/10.1186/s13104-018-3508-1