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Association analyses of more than 140,000 men identify 63 new prostate cancer susceptibility loci.

Authors :
Schumacher FR
Al Olama AA
Berndt SI
Benlloch S
Ahmed M
Saunders EJ
Dadaev T
Leongamornlert D
Anokian E
Cieza-Borrella C
Goh C
Brook MN
Sheng X
Fachal L
Dennis J
Tyrer J
Muir K
Lophatananon A
Stevens VL
Gapstur SM
Carter BD
Tangen CM
Goodman PJ
Thompson IM Jr
Batra J
Chambers S
Moya L
Clements J
Horvath L
Tilley W
Risbridger GP
Gronberg H
Aly M
Nordström T
Pharoah P
Pashayan N
Schleutker J
Tammela TLJ
Sipeky C
Auvinen A
Albanes D
Weinstein S
Wolk A
Håkansson N
West CML
Dunning AM
Burnet N
Mucci LA
Giovannucci E
Andriole GL
Cussenot O
Cancel-Tassin G
Koutros S
Beane Freeman LE
Sorensen KD
Orntoft TF
Borre M
Maehle L
Grindedal EM
Neal DE
Donovan JL
Hamdy FC
Martin RM
Travis RC
Key TJ
Hamilton RJ
Fleshner NE
Finelli A
Ingles SA
Stern MC
Rosenstein BS
Kerns SL
Ostrer H
Lu YJ
Zhang HW
Feng N
Mao X
Guo X
Wang G
Sun Z
Giles GG
Southey MC
MacInnis RJ
FitzGerald LM
Kibel AS
Drake BF
Vega A
Gómez-Caamaño A
Szulkin R
Eklund M
Kogevinas M
Llorca J
Castaño-Vinyals G
Penney KL
Stampfer M
Park JY
Sellers TA
Lin HY
Stanford JL
Cybulski C
Wokolorczyk D
Lubinski J
Ostrander EA
Geybels MS
Nordestgaard BG
Nielsen SF
Weischer M
Bisbjerg R
Røder MA
Iversen P
Brenner H
Cuk K
Holleczek B
Maier C
Luedeke M
Schnoeller T
Kim J
Logothetis CJ
John EM
Teixeira MR
Paulo P
Cardoso M
Neuhausen SL
Steele L
Ding YC
De Ruyck K
De Meerleer G
Ost P
Razack A
Lim J
Teo SH
Lin DW
Newcomb LF
Lessel D
Gamulin M
Kulis T
Kaneva R
Usmani N
Singhal S
Slavov C
Mitev V
Parliament M
Claessens F
Joniau S
Van den Broeck T
Larkin S
Townsend PA
Aukim-Hastie C
Gago-Dominguez M
Castelao JE
Martinez ME
Roobol MJ
Jenster G
van Schaik RHN
Menegaux F
Truong T
Koudou YA
Xu J
Khaw KT
Cannon-Albright L
Pandha H
Michael A
Thibodeau SN
McDonnell SK
Schaid DJ
Lindstrom S
Turman C
Ma J
Hunter DJ
Riboli E
Siddiq A
Canzian F
Kolonel LN
Le Marchand L
Hoover RN
Machiela MJ
Cui Z
Kraft P
Amos CI
Conti DV
Easton DF
Wiklund F
Chanock SJ
Henderson BE
Kote-Jarai Z
Haiman CA
Eeles RA
Source :
Nature genetics [Nat Genet] 2018 Jul; Vol. 50 (7), pp. 928-936. Date of Electronic Publication: 2018 Jun 11.
Publication Year :
2018

Abstract

Genome-wide association studies (GWAS) and fine-mapping efforts to date have identified more than 100 prostate cancer (PrCa)-susceptibility loci. We meta-analyzed genotype data from a custom high-density array of 46,939 PrCa cases and 27,910 controls of European ancestry with previously genotyped data of 32,255 PrCa cases and 33,202 controls of European ancestry. Our analysis identified 62 novel loci associated (P < 5.0 × 10 <superscript>-8</superscript> ) with PrCa and one locus significantly associated with early-onset PrCa (≤55 years). Our findings include missense variants rs1800057 (odds ratio (OR) = 1.16; P = 8.2 × 10 <superscript>-9</superscript> ; G>C, p.Pro1054Arg) in ATM and rs2066827 (OR = 1.06; P = 2.3 × 10 <superscript>-9</superscript> ; T>G, p.Val109Gly) in CDKN1B. The combination of all loci captured 28.4% of the PrCa familial relative risk, and a polygenic risk score conferred an elevated PrCa risk for men in the ninetieth to ninety-ninth percentiles (relative risk = 2.69; 95% confidence interval (CI): 2.55-2.82) and first percentile (relative risk = 5.71; 95% CI: 5.04-6.48) risk stratum compared with the population average. These findings improve risk prediction, enhance fine-mapping, and provide insight into the underlying biology of PrCa <superscript>1</superscript> .

Details

Language :
English
ISSN :
1546-1718
Volume :
50
Issue :
7
Database :
MEDLINE
Journal :
Nature genetics
Publication Type :
Academic Journal
Accession number :
29892016
Full Text :
https://doi.org/10.1038/s41588-018-0142-8