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Synthetic Biology Open Language (SBOL) Version 2.2.0.

Authors :
Cox RS
Madsen C
McLaughlin JA
Nguyen T
Roehner N
Bartley B
Beal J
Bissell M
Choi K
Clancy K
Grünberg R
Macklin C
Misirli G
Oberortner E
Pocock M
Samineni M
Zhang M
Zhang Z
Zundel Z
Gennari JH
Myers C
Sauro H
Wipat A
Source :
Journal of integrative bioinformatics [J Integr Bioinform] 2018 Apr 02; Vol. 15 (1). Date of Electronic Publication: 2018 Apr 02.
Publication Year :
2018

Abstract

Synthetic biology builds upon the techniques and successes of genetics, molecular biology, and metabolic engineering by applying engineering principles to the design of biological systems. The field still faces substantial challenges, including long development times, high rates of failure, and poor reproducibility. One method to ameliorate these problems would be to improve the exchange of information about designed systems between laboratories. The synthetic biology open language (SBOL) has been developed as a standard to support the specification and exchange of biological design information in synthetic biology, filling a need not satisfied by other pre-existing standards. This document details version 2.2.0 of SBOL that builds upon version 2.1.0 published in last year's JIB special issue. In particular, SBOL 2.2.0 includes improved description and validation rules for genetic design provenance, an extension to support combinatorial genetic designs, a new class to add non-SBOL data as attachments, a new class for genetic design implementations, and a description of a methodology to describe the entire design-build-test-learn cycle within the SBOL data model.

Details

Language :
English
ISSN :
1613-4516
Volume :
15
Issue :
1
Database :
MEDLINE
Journal :
Journal of integrative bioinformatics
Publication Type :
Academic Journal
Accession number :
29605823
Full Text :
https://doi.org/10.1515/jib-2018-0001