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Elevated polygenic burden for autism is associated with differential DNA methylation at birth.
- Source :
-
Genome medicine [Genome Med] 2018 Mar 28; Vol. 10 (1), pp. 19. Date of Electronic Publication: 2018 Mar 28. - Publication Year :
- 2018
-
Abstract
- Background: Autism spectrum disorder (ASD) is a severe neurodevelopmental disorder characterized by deficits in social communication and restricted, repetitive behaviors, interests, or activities. The etiology of ASD involves both inherited and environmental risk factors, with epigenetic processes hypothesized as one mechanism by which both genetic and non-genetic variation influence gene regulation and pathogenesis. The aim of this study was to identify DNA methylation biomarkers of ASD detectable at birth.<br />Methods: We quantified neonatal methylomic variation in 1263 infants-of whom ~ 50% went on to subsequently develop ASD-using DNA isolated from archived blood spots taken shortly after birth. We used matched genotype data from the same individuals to examine the molecular consequences of ASD-associated genetic risk variants, identifying methylomic variation associated with elevated polygenic burden for ASD. In addition, we performed DNA methylation quantitative trait loci (mQTL) mapping to prioritize target genes from ASD GWAS findings.<br />Results: We identified robust epigenetic signatures of gestational age and prenatal tobacco exposure, confirming the utility of DNA methylation data generated from neonatal blood spots. Although we did not identify specific loci showing robust differences in neonatal DNA methylation associated with later ASD, there was a significant association between increased polygenic burden for autism and methylomic variation at specific loci. Each unit of elevated ASD polygenic risk score was associated with a mean increase in DNA methylation of - 0.14% at two CpG sites located proximal to a robust GWAS signal for ASD on chromosome 8.<br />Conclusions: This study is the largest analysis of DNA methylation in ASD undertaken and the first to integrate genetic and epigenetic variation at birth. We demonstrate the utility of using a polygenic risk score to identify molecular variation associated with disease, and of using mQTL to refine the functional and regulatory variation associated with ASD risk variants.
- Subjects :
- Autism Spectrum Disorder blood
Cohort Studies
Dried Blood Spot Testing
Epigenesis, Genetic
Female
Gestational Age
Humans
Infant, Newborn
Male
Quantitative Trait Loci genetics
Reproducibility of Results
Nicotiana adverse effects
Autism Spectrum Disorder genetics
DNA Methylation genetics
Multifactorial Inheritance genetics
Parturition
Subjects
Details
- Language :
- English
- ISSN :
- 1756-994X
- Volume :
- 10
- Issue :
- 1
- Database :
- MEDLINE
- Journal :
- Genome medicine
- Publication Type :
- Academic Journal
- Accession number :
- 29587883
- Full Text :
- https://doi.org/10.1186/s13073-018-0527-4