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Future Technologies.
- Source :
-
Microbiology spectrum [Microbiol Spectr] 2018 Mar; Vol. 6 (2). - Publication Year :
- 2018
-
Abstract
- Microbiome analysis of environmental samples may represent the next frontier in environmental microbial forensics. Next-generation sequencing technologies significantly increased the available genetic data that could be used as evidentiary material. It is not clear, however, whether the microbiome can scale across institutions using forensic-based evidence due to the data resource requirements and the associated costs of maintaining these databases. A successful microbiome study is impacted by the quality of the information gathered and the steps in sample processing and data analysis. To ascertain the validity of methods and the results obtained, there needs to be a stringent procedure to validate the methods and ensure that the results are comparable and reproducible, not only within the laboratory but also between laboratories conducting similar research. Of primary importance for meaningful microbiome studies is an experimental design that leads to carefully executed, controlled, and reproducible studies. The microbiome literature contains a fair share of anecdotal descriptions of microbial community composition and "diagnostic" relative abundance of the taxa therein. These studies are now being supplemented by experimental designs that feature repeated measurements, error estimates, correlations of microbiota with covariates, and increasingly sophisticated statistical tests that enhance the robustness of data analysis and study conclusions. It is imperative to be careful, especially when carrying out attribution studies, to be fully aware of the possible biases included in a specific sample being analyzed.
- Subjects :
- Computational Biology methods
Computational Biology standards
Data Analysis
High-Throughput Nucleotide Sequencing methods
Humans
Metagenomics methods
Metagenomics standards
Microbiota physiology
Quality Control
Reproducibility of Results
Research
Research Design
Environmental Microbiology
Environmental Monitoring methods
Environmental Monitoring standards
Forensic Genetics methods
Forensic Genetics standards
Microbiota genetics
Subjects
Details
- Language :
- English
- ISSN :
- 2165-0497
- Volume :
- 6
- Issue :
- 2
- Database :
- MEDLINE
- Journal :
- Microbiology spectrum
- Publication Type :
- Academic Journal
- Accession number :
- 29521257
- Full Text :
- https://doi.org/10.1128/microbiolspec.EMF-0015-2018