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Hor TILLUS-A Rich and Renewable Source of Induced Mutations for Forward/Reverse Genetics and Pre-breeding Programs in Barley ( Hordeum vulgare L.).

Authors :
Szurman-Zubrzycka ME
Zbieszczyk J
Marzec M
Jelonek J
Chmielewska B
Kurowska MM
Krok M
Daszkowska-Golec A
Guzy-Wrobelska J
Gruszka D
Gajecka M
Gajewska P
Stolarek M
Tylec P
Sega P
Lip S
Kudełko M
Lorek M
Gorniak-Walas M
Malolepszy A
Podsiadlo N
Szyrajew KP
Keisa A
Mbambo Z
Todorowska E
Gaj M
Nita Z
Orlowska-Job W
Maluszynski M
Szarejko I
Source :
Frontiers in plant science [Front Plant Sci] 2018 Feb 21; Vol. 9, pp. 216. Date of Electronic Publication: 2018 Feb 21 (Print Publication: 2018).
Publication Year :
2018

Abstract

TILLING (Targeting Induced Local Lesions IN Genomes) is a strategy used for functional analysis of genes that combines the classical mutagenesis and a rapid, high-throughput identification of mutations within a gene of interest. TILLING has been initially developed as a discovery platform for functional genomics, but soon it has become a valuable tool in development of desired alleles for crop breeding, alternative to transgenic approach. Here we present the Hor TILLUS ( Hor deum - TILL ING- U niversity of S ilesia) population created for spring barley cultivar "Sebastian" after double-treatment of seeds with two chemical mutagens: sodium azide (NaN <subscript>3</subscript> ) and N-methyl-N-nitrosourea (MNU). The population comprises more than 9,600 M <subscript>2</subscript> plants from which DNA was isolated, seeds harvested, vacuum-packed, and deposited in seed bank. M <subscript>3</subscript> progeny of 3,481 M <subscript>2</subscript> individuals was grown in the field and phenotyped. The screening for mutations was performed for 32 genes related to different aspects of plant growth and development. For each gene fragment, 3,072-6,912 M <subscript>2</subscript> plants were used for mutation identification using LI-COR sequencer. In total, 382 mutations were found in 182.2 Mb screened. The average mutation density in the Hor TILLUS, estimated as 1 mutation per 477 kb, is among the highest mutation densities reported for barley. The majority of mutations were G/C to A/T transitions, however about 8% transversions were also detected. Sixty-one percent of mutations found in coding regions were missense, 37.5% silent and 1.1% nonsense. In each gene, the missense mutations with a potential effect on protein function were identified. The Hor TILLUS platform is the largest of the TILLING populations reported for barley and best characterized. The population proved to be a useful tool, both in functional genomic studies and in forward selection of barley mutants with required phenotypic changes. We are constantly renewing the Hor TILLUS population, which makes it a permanent source of new mutations. We offer the usage of this valuable resource to the interested barley researchers on cooperative basis.

Details

Language :
English
ISSN :
1664-462X
Volume :
9
Database :
MEDLINE
Journal :
Frontiers in plant science
Publication Type :
Academic Journal
Accession number :
29515615
Full Text :
https://doi.org/10.3389/fpls.2018.00216