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Marmoricola silvestris sp. nov., a novel actinobacterium isolated from alpine forest soil.
- Source :
-
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2018 Apr; Vol. 68 (4), pp. 1313-1318. Date of Electronic Publication: 2018 Mar 02. - Publication Year :
- 2018
-
Abstract
- A Gram-stain-positive, flagellated, catalase- and cytochrome c oxidase-positive bacterial strain, designated S20-100 <superscript>T</superscript> , was isolated from alpine forest soil. Growth occurred at a temperature range of 0-30 °C, at pH 6-9 and in the presence of 0-1 % (w/v) NaCl. Phylogenetic analysis based on 16S rRNA gene sequence showed that strain S20-100 <superscript>T</superscript> was related to the genus Marmoricola and had the highest 16S rRNA gene sequence similarity to Marmoricola ginsengisoli Gsoil 097 <superscript>T</superscript> (98.4 %) and Marmoricola solisilvae KIS18-7 <superscript>T</superscript> (98.3 %). The cell-wall peptidoglycan of strain S20-100 <superscript>T</superscript> contained ll-diaminopimelic acid (ll-Dpm) as the diagnostic diamino acid and was of the type A3γ ll-Dpm - Gly. The strain contained MK-8(H4) as the predominant isoprenoid quinone and diphosphatidylglycerol, phosphatidylglycerol, four unidentified phospholipids and three unidentified lipids in lower amounts. The major cellular fatty acids (>10 %) were iso-C16 : 0, C17 : 1ω6c and C18 : 1ω9c. The genomic DNA G+C content was 66.2 mol%. Combined data of phylogenetic, phenotypic and chemotaxonomic analyses demonstrated that strain S20-100 <superscript>T</superscript> represents a novel species of the genus Marmoricola, for which the name Marmoricola silvestris sp. nov. is proposed. The type strain is S20-100 <superscript>T</superscript> (=DSM 104694 <superscript>T</superscript> =LMG 30008 <superscript>T</superscript> ).
- Subjects :
- Actinomycetales genetics
Actinomycetales isolation & purification
Bacterial Typing Techniques
Base Composition
Cell Wall chemistry
DNA, Bacterial genetics
Diaminopimelic Acid chemistry
Fatty Acids chemistry
Italy
Peptidoglycan chemistry
Phospholipids chemistry
RNA, Ribosomal, 16S genetics
Sequence Analysis, DNA
Actinomycetales classification
Forests
Phylogeny
Soil Microbiology
Subjects
Details
- Language :
- English
- ISSN :
- 1466-5034
- Volume :
- 68
- Issue :
- 4
- Database :
- MEDLINE
- Journal :
- International journal of systematic and evolutionary microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 29498616
- Full Text :
- https://doi.org/10.1099/ijsem.0.002674