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Regulatory network analysis of hypertension and hypotension microarray data from mouse model.
- Source :
-
Clinical and experimental hypertension (New York, N.Y. : 1993) [Clin Exp Hypertens] 2018; Vol. 40 (7), pp. 631-636. Date of Electronic Publication: 2018 Feb 05. - Publication Year :
- 2018
-
Abstract
- We aimed to identify the potential genes related to blood pressure regulation and screen target genes for high blood pressure (BPH) and low blood pressure (BPL) treatment. The GSE19817 microarray dataset, which included the aorta, liver, heart, and kidney samples from BPH, BPL, and normotensive mice, was downloaded from the Gene Expression Omnibus. Principal component analysis (PCA) was performed based on the entire expression profile. Differentially expressed genes (DEGs) were screened, followed by pathway enrichment analysis. Finally, gene regulatory networks were constructed based on BPH-related and BPL-related DEGs in the aorta, liver, heart, and kidney samples. As a result, DEGs were screened within their respective tissues due to high heterogeneity of different tissues. Totally, 2,726 BPH-related DEGs and 2,472 BPL-related DEGs were screened, which were mainly enriched in pathways such as immune response. The topology data of gene regulatory networks constructed by DEGs in the heart, kidney, and liver were similar than that in aorta. Finally, among BPH-related DEGs, Sept6 and Pigx were found in the top 10 differentially regulated DEGs by comparing the BPH-related DEGs of the aorta with the DEGs of the other 3 tissues in the regulatory network. Although among the top 10 differentially regulated BPL-related DEGs, no common differentially regulated DEGs were found, Wif1, Urb2, and Gtf2ird1 were found among the top ten DEGs in the three tissues other than the kidney tissue. Sept6 and Pigx might participate in the pathogenesis of BPH, whereas Gtf2ird1, Urb2, and Wif1 might be critical target genes for BPL treatment.
- Subjects :
- Adaptor Proteins, Signal Transducing
Animals
Aorta chemistry
Disease Models, Animal
Extracellular Matrix Proteins genetics
Gene Expression Profiling
Gene Regulatory Networks
Humans
Intercellular Signaling Peptides and Proteins genetics
Kidney chemistry
Liver chemistry
Mice
Microarray Analysis
Muscle Proteins genetics
Myocardium chemistry
Nuclear Proteins genetics
Principal Component Analysis
Septins genetics
Trans-Activators genetics
Transcriptome
Blood Pressure genetics
Hypertension genetics
Hypotension genetics
Subjects
Details
- Language :
- English
- ISSN :
- 1525-6006
- Volume :
- 40
- Issue :
- 7
- Database :
- MEDLINE
- Journal :
- Clinical and experimental hypertension (New York, N.Y. : 1993)
- Publication Type :
- Academic Journal
- Accession number :
- 29400567
- Full Text :
- https://doi.org/10.1080/10641963.2017.1416120