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Deinococcus hibisci sp. nov., isolated from rhizosphere of Hibiscus syriacus L. (mugunghwa flower).
- Source :
-
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2018 Jan; Vol. 68 (1), pp. 28-34. Date of Electronic Publication: 2017 Nov 02. - Publication Year :
- 2018
-
Abstract
- A Gram-stain-positive, pink-pigmented, coccus-shaped, strictly aerobic, non-motile bacterium, strain THG-AG1.5 <superscript>T</superscript> , was isolated from rhizosphere of Hibiscus syriacus L. (Mugunghwa flower) located in Kyung Hee University, Yongin, Gyeonggi, Republic of Korea. The isolated strain grew optimally at 25-30 °C, at pH 6.0-7.5 and in the presence of additional 0-1.5 % (w/v) NaCl. Strain THG-AG1.5 <superscript>T</superscript> exhibited tolerance to UV radiation (>1500 J m <superscript>-2</superscript> ) and to gamma radiation (>12 kGy). Based on 16S rRNA gene sequence comparisons, strain THG-AG1.5 <superscript>T</superscript> was closely related to Deinococcus daejeonensis MJ27 <superscript>T</superscript> (98.03 %), Deinococcus radiotolerans C1 <superscript>T</superscript> (97.61 %) and Deinococcus grandis DSM 3963 <superscript>T</superscript> (97.32 %). The genomic DNA G+C content of strain THG-AG1.5 <superscript>T</superscript> was 74.8 mol%. The DNA-DNA hybridization values between strain THG-AG1.5 <superscript>T</superscript> and its closest phylogenetically neighbours were below 63.0 %. The peptidoglycan amino acids were alanine, valine, glutamic acid, glycine, ornithine, lysine and aspartic acid. Strain THG-AG1.5 <superscript>T</superscript> contained ribose, mannose and glucose as whole-cell-wall sugars and menaquinone-8 (MK-8) as the only isoprenoid quinone. The major component in the polyamine pattern was spermidine. The major polar lipids of strain THG-AG1.5 <superscript>T</superscript> were a phosphoglycolipid, six unidentified glycolipids and an unidentified aminophospholipid. The major fatty acids were identified as iso-C15 : 0, C15 : 1ω6c, C16 : 0, iso-C17 : 0, C17 : 0, C18 : 0 and summed feature 3. On the basis of our polyphasic taxonomy study, strain THG-AG1.5 <superscript>T</superscript> represents a novel species within the genus Deinococcus, for which the name Deinococcushibisci sp. nov. is proposed. The type strain is THG-AG1.5 <superscript>T</superscript> (=KACC 18850 <superscript>T</superscript> =CCTCC AB 2016078 <superscript>T</superscript> ).
- Subjects :
- Bacterial Typing Techniques
Base Composition
DNA, Bacterial genetics
Deinococcus genetics
Deinococcus isolation & purification
Fatty Acids chemistry
Glycolipids chemistry
Nucleic Acid Hybridization
Peptidoglycan chemistry
Phospholipids chemistry
RNA, Ribosomal, 16S genetics
Republic of Korea
Sequence Analysis, DNA
Vitamin K 2 analogs & derivatives
Vitamin K 2 chemistry
Deinococcus classification
Hibiscus microbiology
Phylogeny
Rhizosphere
Soil Microbiology
Subjects
Details
- Language :
- English
- ISSN :
- 1466-5034
- Volume :
- 68
- Issue :
- 1
- Database :
- MEDLINE
- Journal :
- International journal of systematic and evolutionary microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 29095141
- Full Text :
- https://doi.org/10.1099/ijsem.0.002405