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Spirosoma koreense sp. nov., a species of the family Cytophagaceae isolated from beach soil.
- Source :
-
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2017 Dec; Vol. 67 (12), pp. 5198-5204. Date of Electronic Publication: 2017 Oct 23. - Publication Year :
- 2017
-
Abstract
- A Gram-stain-negative, non-motile, non-spore-forming, rod-shaped, aerobic bacterium, designated 15J8-5 <superscript>T</superscript> , was isolated from beach soil on Jeju Island, Republic of Korea. The isolate grew at 10-37 °C (optimal 25 °C), pH 6-8 (optimal pH 7) and in the presence of 0-1 % (w/v) NaCl. The results of comparative 16S rRNA gene sequence analysis indicated that strain 15J8-5 <superscript>T</superscript> represented a member of the family Cytophagaceae, phylum Bacteroidetes and was most closely related to Spirosoma knui 15J8-12 <superscript>T</superscript> (93.1 % similarity), Spirosoma spitsbergense SPM-9 <superscript>T</superscript> (93.1 %) and Spirosoma endophyticum EX36 <superscript>T</superscript> (93.1 %). The G+C content of the genomic DNA of the novel strain was 48.0 mol%. The isolate contained menaquinone MK-7 as the predominant respiratory quinone, phosphatidylethanolamine as the major polar lipid, and summed feature 3 (C16 : 1ω7c/C16 : 1ω6c; 32.8 %), C16 : 1ω5c (24.8 %) and C16 : 0 (11.7 %) as the major fatty acids, which supported the affiliation of strain 15J8-5 <superscript>T</superscript> to the genus Spirosoma. The results of physiological and biochemical tests allowed genotypic and phenotypic differentiation of strain 15J8-5 <superscript>T</superscript> from members of the genus Spirosoma. Based on its phenotypic properties and phylogenetic distinctiveness, strain 15J8-5 <superscript>T</superscript> represents a novel species of the genus Spirosoma, for which the name Spirosomakoreense sp. nov. is proposed. The type strain is 15J8-5 <superscript>T</superscript> (=KCTC 52027 <superscript>T</superscript> =JCM 31992 <superscript>T</superscript> ).
- Subjects :
- Bacterial Typing Techniques
Base Composition
Cytophagaceae genetics
Cytophagaceae isolation & purification
DNA, Bacterial genetics
Fatty Acids chemistry
Phosphatidylethanolamines chemistry
Phospholipids chemistry
RNA, Ribosomal, 16S genetics
Republic of Korea
Sequence Analysis, DNA
Vitamin K 2 analogs & derivatives
Vitamin K 2 chemistry
Cytophagaceae classification
Phylogeny
Soil Microbiology
Subjects
Details
- Language :
- English
- ISSN :
- 1466-5034
- Volume :
- 67
- Issue :
- 12
- Database :
- MEDLINE
- Journal :
- International journal of systematic and evolutionary microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 29058653
- Full Text :
- https://doi.org/10.1099/ijsem.0.002440