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ComplexViewer: visualization of curated macromolecular complexes.

Authors :
Combe CW
Sivade MD
Hermjakob H
Heimbach J
Meldal BHM
Micklem G
Orchard S
Rappsilber J
Source :
Bioinformatics (Oxford, England) [Bioinformatics] 2017 Nov 15; Vol. 33 (22), pp. 3673-3675.
Publication Year :
2017

Abstract

Summary: Proteins frequently function as parts of complexes, assemblages of multiple proteins and other biomolecules, yet network visualizations usually only show proteins as parts of binary interactions. ComplexViewer visualizes interactions with more than two participants and thereby avoids the need to first expand these into multiple binary interactions. Furthermore, if binding regions between molecules are known then these can be displayed in the context of the larger complex.<br />Availability and Implementation: freely available under Apache version 2 license; EMBL-EBI Complex Portal: http://www.ebi.ac.uk/complexportal; Source code: https://github.com/MICommunity/ComplexViewer; Package: https://www.npmjs.com/package/complexviewer; http://biojs.io/d/complexviewer. Language: JavaScript; Web technology: Scalable Vector Graphics; Libraries: D3.js.<br />Contact: colin.combe@ed.ac.uk or juri.rappsilber@ed.ac.uk.<br /> (© The Author 2017. Published by Oxford University Press.)

Details

Language :
English
ISSN :
1367-4811
Volume :
33
Issue :
22
Database :
MEDLINE
Journal :
Bioinformatics (Oxford, England)
Publication Type :
Academic Journal
Accession number :
29036573
Full Text :
https://doi.org/10.1093/bioinformatics/btx497