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Sleep: An Open-Source Python Software for Visualization, Analysis, and Staging of Sleep Data.

Authors :
Combrisson E
Vallat R
Eichenlaub JB
O'Reilly C
Lajnef T
Guillot A
Ruby PM
Jerbi K
Source :
Frontiers in neuroinformatics [Front Neuroinform] 2017 Sep 21; Vol. 11, pp. 60. Date of Electronic Publication: 2017 Sep 21 (Print Publication: 2017).
Publication Year :
2017

Abstract

We introduce Sleep, a new Python open-source graphical user interface (GUI) dedicated to visualization, scoring and analyses of sleep data. Among its most prominent features are: (1) Dynamic display of polysomnographic data, spectrogram, hypnogram and topographic maps with several customizable parameters, (2) Implementation of several automatic detection of sleep features such as spindles, K-complexes, slow waves, and rapid eye movements (REM), (3) Implementation of practical signal processing tools such as re-referencing or filtering, and (4) Display of main descriptive statistics including publication-ready tables and figures. The software package supports loading and reading raw EEG data from standard file formats such as European Data Format, in addition to a range of commercial data formats. Most importantly, Sleep is built on top of the VisPy library, which provides GPU-based fast and high-level visualization. As a result, it is capable of efficiently handling and displaying large sleep datasets. Sleep is freely available (http://visbrain.org/sleep) and comes with sample datasets and an extensive documentation. Novel functionalities will continue to be added and open-science community efforts are expected to enhance the capacities of this module.

Details

Language :
English
ISSN :
1662-5196
Volume :
11
Database :
MEDLINE
Journal :
Frontiers in neuroinformatics
Publication Type :
Academic Journal
Accession number :
28983246
Full Text :
https://doi.org/10.3389/fninf.2017.00060