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A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci.

Authors :
Chang D
Nalls MA
Hallgrímsdóttir IB
Hunkapiller J
van der Brug M
Cai F
Kerchner GA
Ayalon G
Bingol B
Sheng M
Hinds D
Behrens TW
Singleton AB
Bhangale TR
Graham RR
Source :
Nature genetics [Nat Genet] 2017 Oct; Vol. 49 (10), pp. 1511-1516. Date of Electronic Publication: 2017 Sep 11.
Publication Year :
2017

Abstract

Common variant genome-wide association studies (GWASs) have, to date, identified >24 risk loci for Parkinson's disease (PD). To discover additional loci, we carried out a GWAS comparing 6,476 PD cases with 302,042 controls, followed by a meta-analysis with a recent study of over 13,000 PD cases and 95,000 controls at 9,830 overlapping variants. We then tested 35 loci (P < 1 × 10 <superscript>-6</superscript> ) in a replication cohort of 5,851 cases and 5,866 controls. We identified 17 novel risk loci (P < 5 × 10 <superscript>-8</superscript> ) in a joint analysis of 26,035 cases and 403,190 controls. We used a neurocentric strategy to assign candidate risk genes to the loci. We identified protein-altering or cis-expression quantitative trait locus (cis-eQTL) variants in linkage disequilibrium with the index variant in 29 of the 41 PD loci. These results indicate a key role for autophagy and lysosomal biology in PD risk, and suggest potential new drug targets for PD.

Details

Language :
English
ISSN :
1546-1718
Volume :
49
Issue :
10
Database :
MEDLINE
Journal :
Nature genetics
Publication Type :
Academic Journal
Accession number :
28892059
Full Text :
https://doi.org/10.1038/ng.3955