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Sphingomonas montana sp. nov., isolated from a soil sample from the Tanggula Mountain in the Qinghai Tibetan Plateau.
- Source :
-
Antonie van Leeuwenhoek [Antonie Van Leeuwenhoek] 2017 Dec; Vol. 110 (12), pp. 1659-1668. Date of Electronic Publication: 2017 Jul 28. - Publication Year :
- 2017
-
Abstract
- An orange pigmented, Gram-staining negative, aerobic, motile, rod-shaped bacterium isolated from a soil from the Tanggula Mountain, China was studied using a polyphasic approach. Based on 16S rRNA gene sequence similarity, strain W16RD <superscript>T</superscript> was found to be closely related to Sphingomonas prati DSM 103336 <superscript>T</superscript> (99%), Sphingomonas fennica DSM 13665 <superscript>T</superscript> (97.21%), followed by Sphingomonas laterariae DSM 25432 <superscript>T</superscript> (96.44%), Sphingomonas haloaromaticamans CGMCC 1.10206 <superscript>T</superscript> (96.36%) and Sphingomonas formosensis DSM 24164 <superscript>T</superscript> (96.06%). The strain was found to be catalase and oxidase positive and was found to grow optimally at temperatures of 20-25 °C, pH 8 and tolerated NaCl concentration up to 1% (w/v). The major fatty acids identified were summed feature eight comprising C <subscript>18:1</subscript> ω 7c and/or C <subscript>18:1</subscript> ω 6c (39.2%), summed feature three comprising of C <subscript>16:1</subscript> ω7c and/or C <subscript>16:1</subscript> ω6c (36.7%) and C <subscript>16:0</subscript> (7.0%). The polar lipids detected were phosphatidylcholine, sphingoglycolipid, phosphatidylglycerol, phosphatidylethanolamine, diphosphatidylglycerol, phosphatidyldimethylethanolamine, phosphatidylmonomethylethanolamine, and three unidentified lipids. The strain possessed ubiquinone-10 (Q-10) as the predominant respiratory quinone. Along with other distinguishing characteristics, we also describe the draft genome of strain W16RD <superscript>T</superscript> . The final assembled draft genome sequence is 3,722,743 bp with 3390 coding and 48 RNA (45 tRNA and 3 rRNA) genes. The DNA G+C content of the genomic DNA was determined to be 67%. The DNA-DNA relatedness value between the strain W16RD <superscript>T</superscript> and its closest phylogenetic relatives S. prati DSM 103336 <superscript>T</superscript> , S. fennica DSM 13665 <superscript>T</superscript> , S. laterariae DSM 25432 <superscript>T</superscript> , and S. haloaromaticamans CGMCC 1.10206 <superscript>T</superscript> were 52.17, 47.60, 20.93 and 17.09% respectively. The strain W16RD <superscript>T</superscript> could be distinguished genotypically and phenotypically from the recognized species belonging to the genus Sphingomonas and thus represents a novel species, for which the name Sphingomonas montana sp. nov. is proposed. The type strain is W16RD <superscript>T</superscript> (=CGMCC 1.15646 <superscript>T</superscript>  = DSM 103337 <superscript>T</superscript> ).
- Subjects :
- Computational Biology methods
Genome, Bacterial
Genomics methods
Metabolomics methods
Phylogeny
RNA, Ribosomal, 16S genetics
Sphingomonas chemistry
Sphingomonas isolation & purification
Tibet
Whole Genome Sequencing
Environment
Soil Microbiology
Sphingomonas classification
Sphingomonas genetics
Subjects
Details
- Language :
- English
- ISSN :
- 1572-9699
- Volume :
- 110
- Issue :
- 12
- Database :
- MEDLINE
- Journal :
- Antonie van Leeuwenhoek
- Publication Type :
- Academic Journal
- Accession number :
- 28755311
- Full Text :
- https://doi.org/10.1007/s10482-017-0915-6