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SED-ML web tools: generate, modify and export standard-compliant simulation studies.

Authors :
Bergmann FT
Nickerson D
Waltemath D
Scharm M
Source :
Bioinformatics (Oxford, England) [Bioinformatics] 2017 Apr 15; Vol. 33 (8), pp. 1253-1254.
Publication Year :
2017

Abstract

Summary: The Simulation Experiment Description Markup Language (SED-ML) is a standardized format for exchanging simulation studies independently of software tools. We present the SED-ML Web Tools, an online application for creating, editing, simulating and validating SED-ML documents. The Web Tools implement all current SED-ML specifications and, thus, support complex modifications and co-simulation of models in SBML and CellML formats. Ultimately, the Web Tools lower the bar on working with SED-ML documents and help users create valid simulation descriptions.<br />Availability and Implementation: http://sysbioapps.dyndns.org/SED-ML_Web_Tools/ .<br />Contact: fbergman@caltech.edu .<br /> (© The Author 2017. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com)

Details

Language :
English
ISSN :
1367-4811
Volume :
33
Issue :
8
Database :
MEDLINE
Journal :
Bioinformatics (Oxford, England)
Publication Type :
Academic Journal
Accession number :
28049131
Full Text :
https://doi.org/10.1093/bioinformatics/btw812