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Identification of further diversity among posaviruses.

Authors :
Sano K
Naoi Y
Kishimoto M
Masuda T
Tanabe H
Ito M
Niira K
Haga K
Asano K
Tsuchiaka S
Omatsu T
Furuya T
Katayama Y
Oba M
Ouchi Y
Yamasato H
Ishida M
Shirai J
Katayama K
Mizutani T
Nagai M
Source :
Archives of virology [Arch Virol] 2016 Dec; Vol. 161 (12), pp. 3541-3548. Date of Electronic Publication: 2016 Sep 12.
Publication Year :
2016

Abstract

Recently, there have been reports of new members of posavirus-like viruses in the order Picornavirales. In this study, using a metagenomics approach, 11 posavirus-like sequences (>7,000 nucleotides) were detected in 155 porcine fecal samples. Phylogenetic analysis revealed that the newly identified virus sequences, together with other posavirus-like viruses, form distinct clusters within the order Picornavirales, composed of eight genogroups and unassigned sequences based on amino acid sequences of the helicase and RNA-dependent RNA polymerase regions, with <40 % and <50 % sequence identity, respectively. We propose further classifications of highly diverse posavirus populations based on newly identified sequences from Japanese pig feces.

Details

Language :
English
ISSN :
1432-8798
Volume :
161
Issue :
12
Database :
MEDLINE
Journal :
Archives of virology
Publication Type :
Academic Journal
Accession number :
27619795
Full Text :
https://doi.org/10.1007/s00705-016-3048-8