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Simple approach for ranking structure determining residues.

Authors :
Luna-Martínez OD
Vidal-Limón A
Villalba-Velázquez MI
Sánchez-Alcalá R
Garduño-Juárez R
Uversky VN
Becerril B
Source :
PeerJ [PeerJ] 2016 Jun 22; Vol. 4, pp. e2136. Date of Electronic Publication: 2016 Jun 22 (Print Publication: 2016).
Publication Year :
2016

Abstract

Mutating residues has been a common task in order to study structural properties of the protein of interest. Here, we propose and validate a simple method that allows the identification of structural determinants; i.e., residues essential for preservation of the stability of global structure, regardless of the protein topology. This method evaluates all of the residues in a 3D structure of a given globular protein by ranking them according to their connectivity and movement restrictions without topology constraints. Our results matched up with sequence-based predictors that look up for intrinsically disordered segments, suggesting that protein disorder can also be described with the proposed methodology.

Details

Language :
English
ISSN :
2167-8359
Volume :
4
Database :
MEDLINE
Journal :
PeerJ
Publication Type :
Academic Journal
Accession number :
27366642
Full Text :
https://doi.org/10.7717/peerj.2136