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Subtle structural changes in the Asp251Gly/Gln307His P450 BM3 mutant responsible for new activity toward diclofenac, tolbutamide and ibuprofen.
- Source :
-
Archives of biochemistry and biophysics [Arch Biochem Biophys] 2016 Jul 15; Vol. 602, pp. 106-115. Date of Electronic Publication: 2015 Dec 21. - Publication Year :
- 2016
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Abstract
- This paper reports the structure of the double mutant Asp251Gly/Gln307His (named A2) generated by random mutagenesis, able to produce 4'-hydroxydiclofenac, 2-hydroxyibuprofen and 4-hydroxytolbutamide from diclofenac, ibuprofen and tolbutamide, respectively. The 3D structure of the substrate-free mutant shows a conformation similar to the closed one found in the substrate-bound wild type enzyme, but with a higher degree of disorder in the region of the G-helix and F-G loop. This is due to the mutation Asp251Gly that breaks the salt bridge between Aps251 on I-helix and Lys224 on G-helix, allowing the G-helix to move away from I-helix and conferring a higher degree of flexibility to this element. This subtle structural change is accompanied by long-range structural rearrangements of the active site with the rotation of Phe87 and a reorganization of catalytically important water molecules. The impact of these structural features on thermal stability, reduction potential and electron transfer is investigated. The data demonstrate that a single mutation far from the active site triggers an increase in protein flexibility in a key region, shifting the conformational equilibrium toward the closed form that is ready to accept electrons and enter the P450 catalytic cycle as soon as a substrate is accepted.<br /> (Copyright © 2015 Elsevier Inc. All rights reserved.)
- Subjects :
- Amino Acid Sequence
Bacterial Proteins genetics
Binding Sites
Computer Simulation
Cytochrome P-450 Enzyme System genetics
Enzyme Activation
Molecular Sequence Data
Mutation genetics
NADPH-Ferrihemoprotein Reductase genetics
Protein Binding
Protein Conformation
Structure-Activity Relationship
Bacterial Proteins chemistry
Bacterial Proteins ultrastructure
Cytochrome P-450 Enzyme System chemistry
Cytochrome P-450 Enzyme System ultrastructure
Diclofenac chemistry
Ibuprofen chemistry
Molecular Docking Simulation methods
NADPH-Ferrihemoprotein Reductase chemistry
NADPH-Ferrihemoprotein Reductase ultrastructure
Tolbutamide chemistry
Subjects
Details
- Language :
- English
- ISSN :
- 1096-0384
- Volume :
- 602
- Database :
- MEDLINE
- Journal :
- Archives of biochemistry and biophysics
- Publication Type :
- Academic Journal
- Accession number :
- 26718083
- Full Text :
- https://doi.org/10.1016/j.abb.2015.12.005