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The complete chloroplast genome sequences of Iris sanguinea donn ex Hornem.
- Source :
-
Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis [Mitochondrial DNA A DNA Mapp Seq Anal] 2017 Jan; Vol. 28 (1), pp. 15-16. Date of Electronic Publication: 2015 Dec 07. - Publication Year :
- 2017
-
Abstract
- The complete chloroplast genome of Iris sanguinea was sequenced newly in this study. The total chloroplast genome size of I. sanguinea was 152 408 bp, its structure and gene contents were well conserved as typical chloroplast characteristics. Large single copy (LSC) and small single copy (SSC) of 82 340 bp and 18 016 bp, respectively, were separated from a pair of inverted repeats (IRA and IRB) of 26 026 bp. A total of 112 genes, i.e. 78 protein-coding genes, 30 tRNA genes, and four rRNA genes, were encoded in the chloroplast genome of I. sanguinea. Overall GC content of I. sanguinea was 36.83%. Phylogenetic analysis with the reported chloroplast genomes revealed that I. sanguinea is most closely related to I. gatesii.
- Subjects :
- DNA, Chloroplast chemistry
DNA, Chloroplast isolation & purification
DNA, Chloroplast metabolism
Iridaceae classification
Microsatellite Repeats genetics
Open Reading Frames genetics
Phylogeny
Plant Proteins chemistry
Plant Proteins genetics
Plant Proteins metabolism
RNA, Ribosomal chemistry
RNA, Ribosomal genetics
RNA, Transfer chemistry
RNA, Transfer genetics
Sequence Analysis, DNA
Chloroplasts genetics
Genome, Chloroplast
Iridaceae genetics
Subjects
Details
- Language :
- English
- ISSN :
- 2470-1408
- Volume :
- 28
- Issue :
- 1
- Database :
- MEDLINE
- Journal :
- Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis
- Publication Type :
- Academic Journal
- Accession number :
- 26641138
- Full Text :
- https://doi.org/10.3109/19401736.2015.1106521