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The UCSC Genome Browser database: 2016 update.

Authors :
Speir ML
Zweig AS
Rosenbloom KR
Raney BJ
Paten B
Nejad P
Lee BT
Learned K
Karolchik D
Hinrichs AS
Heitner S
Harte RA
Haeussler M
Guruvadoo L
Fujita PA
Eisenhart C
Diekhans M
Clawson H
Casper J
Barber GP
Haussler D
Kuhn RM
Kent WJ
Source :
Nucleic acids research [Nucleic Acids Res] 2016 Jan 04; Vol. 44 (D1), pp. D717-25. Date of Electronic Publication: 2015 Nov 20.
Publication Year :
2016

Abstract

For the past 15 years, the UCSC Genome Browser (http://genome.ucsc.edu/) has served the international research community by offering an integrated platform for viewing and analyzing information from a large database of genome assemblies and their associated annotations. The UCSC Genome Browser has been under continuous development since its inception with new data sets and software features added frequently. Some release highlights of this year include new and updated genome browsers for various assemblies, including bonobo and zebrafish; new gene annotation sets; improvements to track and assembly hub support; and a new interactive tool, the "Data Integrator", for intersecting data from multiple tracks. We have greatly expanded the data sets available on the most recent human assembly, hg38/GRCh38, to include updated gene prediction sets from GENCODE, more phenotype- and disease-associated variants from ClinVar and ClinGen, more genomic regulatory data, and a new multiple genome alignment.<br /> (© The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.)

Details

Language :
English
ISSN :
1362-4962
Volume :
44
Issue :
D1
Database :
MEDLINE
Journal :
Nucleic acids research
Publication Type :
Academic Journal
Accession number :
26590259
Full Text :
https://doi.org/10.1093/nar/gkv1275