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ViPAR: a software platform for the Virtual Pooling and Analysis of Research Data.

Authors :
Carter KW
Francis RW
Carter KW
Francis RW
Bresnahan M
Gissler M
Grønborg TK
Gross R
Gunnes N
Hammond G
Hornig M
Hultman CM
Huttunen J
Langridge A
Leonard H
Newman S
Parner ET
Petersson G
Reichenberg A
Sandin S
Schendel DE
Schalkwyk L
Sourander A
Steadman C
Stoltenberg C
Suominen A
Surén P
Susser E
Sylvester Vethanayagam A
Yusof Z
Source :
International journal of epidemiology [Int J Epidemiol] 2016 Apr; Vol. 45 (2), pp. 408-416. Date of Electronic Publication: 2015 Oct 08.
Publication Year :
2016

Abstract

Background: Research studies exploring the determinants of disease require sufficient statistical power to detect meaningful effects. Sample size is often increased through centralized pooling of disparately located datasets, though ethical, privacy and data ownership issues can often hamper this process. Methods that facilitate the sharing of research data that are sympathetic with these issues and which allow flexible and detailed statistical analyses are therefore in critical need. We have created a software platform for the Virtual Pooling and Analysis of Research data (ViPAR), which employs free and open source methods to provide researchers with a web-based platform to analyse datasets housed in disparate locations.<br />Methods: Database federation permits controlled access to remotely located datasets from a central location. The Secure Shell protocol allows data to be securely exchanged between devices over an insecure network. ViPAR combines these free technologies into a solution that facilitates 'virtual pooling' where data can be temporarily pooled into computer memory and made available for analysis without the need for permanent central storage.<br />Results: Within the ViPAR infrastructure, remote sites manage their own harmonized research dataset in a database hosted at their site, while a central server hosts the data federation component and a secure analysis portal. When an analysis is initiated, requested data are retrieved from each remote site and virtually pooled at the central site. The data are then analysed by statistical software and, on completion, results of the analysis are returned to the user and the virtually pooled data are removed from memory.<br />Conclusions: ViPAR is a secure, flexible and powerful analysis platform built on open source technology that is currently in use by large international consortia, and is made publicly available at [http://bioinformatics.childhealthresearch.org.au/software/vipar/].<br /> (© The Author 2015. Published by Oxford University Press on behalf of the International Epidemiological Association.)

Details

Language :
English
ISSN :
1464-3685
Volume :
45
Issue :
2
Database :
MEDLINE
Journal :
International journal of epidemiology
Publication Type :
Academic Journal
Accession number :
26452388
Full Text :
https://doi.org/10.1093/ije/dyv193