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Temperature Dependence of Logarithmic-like Relaxational Dynamics of Hydrated tRNA.

Authors :
Chu XQ
Mamontov E
O'Neill H
Zhang Q
Source :
The journal of physical chemistry letters [J Phys Chem Lett] 2013 Mar 21; Vol. 4 (6), pp. 936-42. Date of Electronic Publication: 2013 Mar 07.
Publication Year :
2013

Abstract

The dynamics of RNA within the β-relaxation region of 10 ps to 1 ns is crucial to its biological function. Because of its simpler chemical building blocks and the lack of the side methyl groups, faster relaxational dynamics of RNA compared to proteins can be expected. However, the situation is actually opposite. In this work, the relaxational dynamics of tRNA is measured by quasielastic neutron scattering and analyzed using the mode coupling theory, originally developed for glass-forming liquids. Our results reveal that the dynamics of tRNA follows a log-decay within the β-relaxation region, which is an important trait demonstrated by the dynamics of proteins. The dynamics of hydrated tRNA and lysozyme compared in the time domain further demonstrate that the slower dynamics of tRNA relative to proteins originates from the difference in the folded states of tRNA and proteins, as well as the influence of their hydration water.

Details

Language :
English
ISSN :
1948-7185
Volume :
4
Issue :
6
Database :
MEDLINE
Journal :
The journal of physical chemistry letters
Publication Type :
Academic Journal
Accession number :
26291359
Full Text :
https://doi.org/10.1021/jz400128u