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Strand separation establishes a sustained lock at the Tus-Ter replication fork barrier.
- Source :
-
Nature chemical biology [Nat Chem Biol] 2015 Aug; Vol. 11 (8), pp. 579-85. Date of Electronic Publication: 2015 Jul 06. - Publication Year :
- 2015
-
Abstract
- The bidirectional replication of a circular chromosome by many bacteria necessitates proper termination to avoid the head-on collision of the opposing replisomes. In Escherichia coli, replisome progression beyond the termination site is prevented by Tus proteins bound to asymmetric Ter sites. Structural evidence indicates that strand separation on the blocking (nonpermissive) side of Tus-Ter triggers roadblock formation, but biochemical evidence also suggests roles for protein-protein interactions. Here DNA unzipping experiments demonstrate that nonpermissively oriented Tus-Ter forms a tight lock in the absence of replicative proteins, whereas permissively oriented Tus-Ter allows nearly unhindered strand separation. Quantifying the lock strength reveals the existence of several intermediate lock states that are impacted by mutations in the lock domain but not by mutations in the DNA-binding domain. Lock formation is highly specific and exceeds reported in vivo efficiencies. We postulate that protein-protein interactions may actually hinder, rather than promote, proper lock formation.
- Subjects :
- Base Sequence
Binding Sites
Chromosomes, Bacterial chemistry
Chromosomes, Bacterial metabolism
DNA, Bacterial chemistry
DNA, Circular chemistry
DNA-Binding Proteins chemistry
DNA-Binding Proteins genetics
Escherichia coli genetics
Escherichia coli Proteins chemistry
Escherichia coli Proteins genetics
Models, Molecular
Molecular Sequence Data
Mutation
Protein Binding
Protein Structure, Secondary
Protein Structure, Tertiary
DNA Replication
DNA, Bacterial metabolism
DNA, Circular metabolism
DNA-Binding Proteins metabolism
Escherichia coli metabolism
Escherichia coli Proteins metabolism
Subjects
Details
- Language :
- English
- ISSN :
- 1552-4469
- Volume :
- 11
- Issue :
- 8
- Database :
- MEDLINE
- Journal :
- Nature chemical biology
- Publication Type :
- Academic Journal
- Accession number :
- 26147356
- Full Text :
- https://doi.org/10.1038/nchembio.1857