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Integral membrane protein structure determination using pseudocontact shifts.
- Source :
-
Journal of biomolecular NMR [J Biomol NMR] 2015 Apr; Vol. 61 (3-4), pp. 197-207. Date of Electronic Publication: 2015 Jan 22. - Publication Year :
- 2015
-
Abstract
- Obtaining enough experimental restraints can be a limiting factor in the NMR structure determination of larger proteins. This is particularly the case for large assemblies such as membrane proteins that have been solubilized in a membrane-mimicking environment. Whilst in such cases extensive deuteration strategies are regularly utilised with the aim to improve the spectral quality, these schemes often limit the number of NOEs obtainable, making complementary strategies highly beneficial for successful structure elucidation. Recently, lanthanide-induced pseudocontact shifts (PCSs) have been established as a structural tool for globular proteins. Here, we demonstrate that a PCS-based approach can be successfully applied for the structure determination of integral membrane proteins. Using the 7TM α-helical microbial receptor pSRII, we show that PCS-derived restraints from lanthanide binding tags attached to four different positions of the protein facilitate the backbone structure determination when combined with a limited set of NOEs. In contrast, the same set of NOEs fails to determine the correct 3D fold. The latter situation is frequently encountered in polytopical α-helical membrane proteins and a PCS approach is thus suitable even for this particularly challenging class of membrane proteins. The ease of measuring PCSs makes this an attractive route for structure determination of large membrane proteins in general.
- Subjects :
- Archaeal Proteins chemistry
Halorhodopsins chemistry
Membrane Proteins chemistry
Models, Molecular
Natronobacterium metabolism
Protein Conformation
Protein Folding
Sensory Rhodopsins chemistry
Archaeal Proteins ultrastructure
Halorhodopsins ultrastructure
Lanthanoid Series Elements chemistry
Membrane Proteins ultrastructure
Nuclear Magnetic Resonance, Biomolecular methods
Sensory Rhodopsins ultrastructure
Subjects
Details
- Language :
- English
- ISSN :
- 1573-5001
- Volume :
- 61
- Issue :
- 3-4
- Database :
- MEDLINE
- Journal :
- Journal of biomolecular NMR
- Publication Type :
- Academic Journal
- Accession number :
- 25604936
- Full Text :
- https://doi.org/10.1007/s10858-015-9899-6