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Viewing the proteome: how to visualize proteomics data?

Authors :
Oveland E
Muth T
Rapp E
Martens L
Berven FS
Barsnes H
Source :
Proteomics [Proteomics] 2015 Apr; Vol. 15 (8), pp. 1341-55. Date of Electronic Publication: 2015 Jan 21.
Publication Year :
2015

Abstract

Proteomics has become one of the main approaches for analyzing and understanding biological systems. Yet similar to other high-throughput analysis methods, the presentation of the large amounts of obtained data in easily interpretable ways remains challenging. In this review, we present an overview of the different ways in which proteomics software supports the visualization and interpretation of proteomics data. The unique challenges and current solutions for visualizing the different aspects of proteomics data, from acquired spectra via protein identification and quantification to pathway analysis, are discussed, and examples of the most useful visualization approaches are highlighted. Finally, we offer our ideas about future directions for proteomics data visualization.<br /> (© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)

Details

Language :
English
ISSN :
1615-9861
Volume :
15
Issue :
8
Database :
MEDLINE
Journal :
Proteomics
Publication Type :
Academic Journal
Accession number :
25504833
Full Text :
https://doi.org/10.1002/pmic.201400412