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GenePainter v. 2.0 resolves the taxonomic distribution of intron positions.

Authors :
Mühlhausen S
Hellkamp M
Kollmar M
Source :
Bioinformatics (Oxford, England) [Bioinformatics] 2015 Apr 15; Vol. 31 (8), pp. 1302-4. Date of Electronic Publication: 2014 Nov 29.
Publication Year :
2015

Abstract

Unlabelled: Conserved intron positions in eukaryotic genes can be used to reconstruct phylogenetic trees, to resolve ambiguous subfamily relationships in protein families and to infer the history of gene families. This version of GenePainter facilitates working with large datasets through options to select specific subsets for analysis and visualization, and through providing exhaustive statistics. GenePainter's application in phylogenetic analyses is considerably extended by the newly implemented integration of the exon-intron pattern conservation with phylogenetic trees.<br />Availability and Implementation: The software along with detailed documentation is available at http://www.motorprotein.de/genepainter and as Supplementary Material.<br />Contact: mako@nmr.mpibpc.mpg.de<br />Supplementary Information: Supplementary data are available at Bioinformatics online.<br /> (© The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.)

Details

Language :
English
ISSN :
1367-4811
Volume :
31
Issue :
8
Database :
MEDLINE
Journal :
Bioinformatics (Oxford, England)
Publication Type :
Academic Journal
Accession number :
25434742
Full Text :
https://doi.org/10.1093/bioinformatics/btu798