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Defining the role of common variation in the genomic and biological architecture of adult human height.

Authors :
Wood AR
Esko T
Yang J
Vedantam S
Pers TH
Gustafsson S
Chu AY
Estrada K
Luan J
Kutalik Z
Amin N
Buchkovich ML
Croteau-Chonka DC
Day FR
Duan Y
Fall T
Fehrmann R
Ferreira T
Jackson AU
Karjalainen J
Lo KS
Locke AE
Mägi R
Mihailov E
Porcu E
Randall JC
Scherag A
Vinkhuyzen AA
Westra HJ
Winkler TW
Workalemahu T
Zhao JH
Absher D
Albrecht E
Anderson D
Baron J
Beekman M
Demirkan A
Ehret GB
Feenstra B
Feitosa MF
Fischer K
Fraser RM
Goel A
Gong J
Justice AE
Kanoni S
Kleber ME
Kristiansson K
Lim U
Lotay V
Lui JC
Mangino M
Mateo Leach I
Medina-Gomez C
Nalls MA
Nyholt DR
Palmer CD
Pasko D
Pechlivanis S
Prokopenko I
Ried JS
Ripke S
Shungin D
Stancáková A
Strawbridge RJ
Sung YJ
Tanaka T
Teumer A
Trompet S
van der Laan SW
van Setten J
Van Vliet-Ostaptchouk JV
Wang Z
Yengo L
Zhang W
Afzal U
Arnlöv J
Arscott GM
Bandinelli S
Barrett A
Bellis C
Bennett AJ
Berne C
Blüher M
Bolton JL
Böttcher Y
Boyd HA
Bruinenberg M
Buckley BM
Buyske S
Caspersen IH
Chines PS
Clarke R
Claudi-Boehm S
Cooper M
Daw EW
De Jong PA
Deelen J
Delgado G
Denny JC
Dhonukshe-Rutten R
Dimitriou M
Doney AS
Dörr M
Eklund N
Eury E
Folkersen L
Garcia ME
Geller F
Giedraitis V
Go AS
Grallert H
Grammer TB
Gräßler J
Grönberg H
de Groot LC
Groves CJ
Haessler J
Hall P
Haller T
Hallmans G
Hannemann A
Hartman CA
Hassinen M
Hayward C
Heard-Costa NL
Helmer Q
Hemani G
Henders AK
Hillege HL
Hlatky MA
Hoffmann W
Hoffmann P
Holmen O
Houwing-Duistermaat JJ
Illig T
Isaacs A
James AL
Jeff J
Johansen B
Johansson Å
Jolley J
Juliusdottir T
Junttila J
Kho AN
Kinnunen L
Klopp N
Kocher T
Kratzer W
Lichtner P
Lind L
Lindström J
Lobbens S
Lorentzon M
Lu Y
Lyssenko V
Magnusson PK
Mahajan A
Maillard M
McArdle WL
McKenzie CA
McLachlan S
McLaren PJ
Menni C
Merger S
Milani L
Moayyeri A
Monda KL
Morken MA
Müller G
Müller-Nurasyid M
Musk AW
Narisu N
Nauck M
Nolte IM
Nöthen MM
Oozageer L
Pilz S
Rayner NW
Renstrom F
Robertson NR
Rose LM
Roussel R
Sanna S
Scharnagl H
Scholtens S
Schumacher FR
Schunkert H
Scott RA
Sehmi J
Seufferlein T
Shi J
Silventoinen K
Smit JH
Smith AV
Smolonska J
Stanton AV
Stirrups K
Stott DJ
Stringham HM
Sundström J
Swertz MA
Syvänen AC
Tayo BO
Thorleifsson G
Tyrer JP
van Dijk S
van Schoor NM
van der Velde N
van Heemst D
van Oort FV
Vermeulen SH
Verweij N
Vonk JM
Waite LL
Waldenberger M
Wennauer R
Wilkens LR
Willenborg C
Wilsgaard T
Wojczynski MK
Wong A
Wright AF
Zhang Q
Arveiler D
Bakker SJ
Beilby J
Bergman RN
Bergmann S
Biffar R
Blangero J
Boomsma DI
Bornstein SR
Bovet P
Brambilla P
Brown MJ
Campbell H
Caulfield MJ
Chakravarti A
Collins R
Collins FS
Crawford DC
Cupples LA
Danesh J
de Faire U
den Ruijter HM
Erbel R
Erdmann J
Eriksson JG
Farrall M
Ferrannini E
Ferrières J
Ford I
Forouhi NG
Forrester T
Gansevoort RT
Gejman PV
Gieger C
Golay A
Gottesman O
Gudnason V
Gyllensten U
Haas DW
Hall AS
Harris TB
Hattersley AT
Heath AC
Hengstenberg C
Hicks AA
Hindorff LA
Hingorani AD
Hofman A
Hovingh GK
Humphries SE
Hunt SC
Hypponen E
Jacobs KB
Jarvelin MR
Jousilahti P
Jula AM
Kaprio J
Kastelein JJ
Kayser M
Kee F
Keinanen-Kiukaanniemi SM
Kiemeney LA
Kooner JS
Kooperberg C
Koskinen S
Kovacs P
Kraja AT
Kumari M
Kuusisto J
Lakka TA
Langenberg C
Le Marchand L
Lehtimäki T
Lupoli S
Madden PA
Männistö S
Manunta P
Marette A
Matise TC
McKnight B
Meitinger T
Moll FL
Montgomery GW
Morris AD
Morris AP
Murray JC
Nelis M
Ohlsson C
Oldehinkel AJ
Ong KK
Ouwehand WH
Pasterkamp G
Peters A
Pramstaller PP
Price JF
Qi L
Raitakari OT
Rankinen T
Rao DC
Rice TK
Ritchie M
Rudan I
Salomaa V
Samani NJ
Saramies J
Sarzynski MA
Schwarz PE
Sebert S
Sever P
Shuldiner AR
Sinisalo J
Steinthorsdottir V
Stolk RP
Tardif JC
Tönjes A
Tremblay A
Tremoli E
Virtamo J
Vohl MC
Amouyel P
Asselbergs FW
Assimes TL
Bochud M
Boehm BO
Boerwinkle E
Bottinger EP
Bouchard C
Cauchi S
Chambers JC
Chanock SJ
Cooper RS
de Bakker PI
Dedoussis G
Ferrucci L
Franks PW
Froguel P
Groop LC
Haiman CA
Hamsten A
Hayes MG
Hui J
Hunter DJ
Hveem K
Jukema JW
Kaplan RC
Kivimaki M
Kuh D
Laakso M
Liu Y
Martin NG
März W
Melbye M
Moebus S
Munroe PB
Njølstad I
Oostra BA
Palmer CN
Pedersen NL
Perola M
Pérusse L
Peters U
Powell JE
Power C
Quertermous T
Rauramaa R
Reinmaa E
Ridker PM
Rivadeneira F
Rotter JI
Saaristo TE
Saleheen D
Schlessinger D
Slagboom PE
Snieder H
Spector TD
Strauch K
Stumvoll M
Tuomilehto J
Uusitupa M
van der Harst P
Völzke H
Walker M
Wareham NJ
Watkins H
Wichmann HE
Wilson JF
Zanen P
Deloukas P
Heid IM
Lindgren CM
Mohlke KL
Speliotes EK
Thorsteinsdottir U
Barroso I
Fox CS
North KE
Strachan DP
Beckmann JS
Berndt SI
Boehnke M
Borecki IB
McCarthy MI
Metspalu A
Stefansson K
Uitterlinden AG
van Duijn CM
Franke L
Willer CJ
Price AL
Lettre G
Loos RJ
Weedon MN
Ingelsson E
O'Connell JR
Abecasis GR
Chasman DI
Goddard ME
Visscher PM
Hirschhorn JN
Frayling TM
Source :
Nature genetics [Nat Genet] 2014 Nov; Vol. 46 (11), pp. 1173-86. Date of Electronic Publication: 2014 Oct 05.
Publication Year :
2014

Abstract

Using genome-wide data from 253,288 individuals, we identified 697 variants at genome-wide significance that together explained one-fifth of the heritability for adult height. By testing different numbers of variants in independent studies, we show that the most strongly associated ∼2,000, ∼3,700 and ∼9,500 SNPs explained ∼21%, ∼24% and ∼29% of phenotypic variance. Furthermore, all common variants together captured 60% of heritability. The 697 variants clustered in 423 loci were enriched for genes, pathways and tissue types known to be involved in growth and together implicated genes and pathways not highlighted in earlier efforts, such as signaling by fibroblast growth factors, WNT/β-catenin and chondroitin sulfate-related genes. We identified several genes and pathways not previously connected with human skeletal growth, including mTOR, osteoglycin and binding of hyaluronic acid. Our results indicate a genetic architecture for human height that is characterized by a very large but finite number (thousands) of causal variants.

Details

Language :
English
ISSN :
1546-1718
Volume :
46
Issue :
11
Database :
MEDLINE
Journal :
Nature genetics
Publication Type :
Academic Journal
Accession number :
25282103
Full Text :
https://doi.org/10.1038/ng.3097