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Spatial ranges of driving forces are a key determinant of protein folding cooperativity and rate diversity.
- Source :
-
Physical review. E, Statistical, nonlinear, and soft matter physics [Phys Rev E Stat Nonlin Soft Matter Phys] 2013 Oct; Vol. 88 (4), pp. 044701. Date of Electronic Publication: 2013 Oct 14. - Publication Year :
- 2013
-
Abstract
- The physical basis of two-state-like folding transitions and the tremendous diversity in folding rates is elucidated by directly simulating the folding kinetics of 52 representative proteins. Relative to the results from a common modeling approach, the diversity of the simulated folding rates can be increased from ~10(2.1) to the experimental ~10(6.0) by a modest decrease in the spatial range of the attractive potential. The required theoretical range is consistent with desolvation physics and is notably much more permissive than that needed for two-state-like homopolymer collapse.
- Subjects :
- Kinetics
Thermodynamics
Models, Molecular
Protein Folding
Proteins chemistry
Subjects
Details
- Language :
- English
- ISSN :
- 1550-2376
- Volume :
- 88
- Issue :
- 4
- Database :
- MEDLINE
- Journal :
- Physical review. E, Statistical, nonlinear, and soft matter physics
- Publication Type :
- Academic Journal
- Accession number :
- 24229309
- Full Text :
- https://doi.org/10.1103/PhysRevE.88.044701