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Spatial ranges of driving forces are a key determinant of protein folding cooperativity and rate diversity.

Authors :
Kaya H
Uzunoğlu Z
Chan HS
Source :
Physical review. E, Statistical, nonlinear, and soft matter physics [Phys Rev E Stat Nonlin Soft Matter Phys] 2013 Oct; Vol. 88 (4), pp. 044701. Date of Electronic Publication: 2013 Oct 14.
Publication Year :
2013

Abstract

The physical basis of two-state-like folding transitions and the tremendous diversity in folding rates is elucidated by directly simulating the folding kinetics of 52 representative proteins. Relative to the results from a common modeling approach, the diversity of the simulated folding rates can be increased from ~10(2.1) to the experimental ~10(6.0) by a modest decrease in the spatial range of the attractive potential. The required theoretical range is consistent with desolvation physics and is notably much more permissive than that needed for two-state-like homopolymer collapse.

Details

Language :
English
ISSN :
1550-2376
Volume :
88
Issue :
4
Database :
MEDLINE
Journal :
Physical review. E, Statistical, nonlinear, and soft matter physics
Publication Type :
Academic Journal
Accession number :
24229309
Full Text :
https://doi.org/10.1103/PhysRevE.88.044701