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Transferable mixing of atomistic and coarse-grained water models.

Authors :
Gonzalez HC
Darré L
Pantano S
Source :
The journal of physical chemistry. B [J Phys Chem B] 2013 Nov 21; Vol. 117 (46), pp. 14438-48. Date of Electronic Publication: 2013 Nov 12.
Publication Year :
2013

Abstract

Dual-resolution approaches for molecular simulations combine the best of two worlds, providing atomic details in regions of interest and coarser but much faster descriptions of less-relevant parts of molecular systems. Given the abundance of water in biomolecular systems, reducing the computational cost of simulating bulk water without perturbing the solute's properties is a very attractive strategy. Here we show that the coarse-grained model for water called WatFour (WT4) can be combined with any of the three most used water models for atomistic simulations (SPC, TIP3P, and SPC/E) without modifying the characteristics of the atomistic solvent and solutes. The equivalence of fully atomistic and hybrid solvation approaches is assessed by comparative simulations of pure water, electrolyte solutions, and the β1 domain of streptococcal protein G, for which comparisons between experimental and calculated chemical shifts at (13)Cα are equivalent.

Details

Language :
English
ISSN :
1520-5207
Volume :
117
Issue :
46
Database :
MEDLINE
Journal :
The journal of physical chemistry. B
Publication Type :
Academic Journal
Accession number :
24219057
Full Text :
https://doi.org/10.1021/jp4079579