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Pseudomonas asturiensis sp. nov., isolated from soybean and weeds.
- Source :
-
Systematic and applied microbiology [Syst Appl Microbiol] 2013 Jul; Vol. 36 (5), pp. 320-4. Date of Electronic Publication: 2013 May 30. - Publication Year :
- 2013
-
Abstract
- Five strains of gram negative bacteria, isolated from soybean (LPPA 221(T), 222 and 223) and weeds (LPPA 816 and 1442), were analyzed by a polyphasic approach. The isolates showed variation in their phenotypic traits and were placed in the Pseudomonas fluorescens lineage, based on 16S rRNA gene sequence phylogeny, as a single but well separated cluster. MLSA analysis based on gyrB and rpoD sequences clustered the strains in a single branch in the Pseudomonas syringae group, and revealed P. viridiflava as closest relative. DNA-DNA hybridizations showed medium levels of DNA-DNA relatedness with the type strain of P. viridiflava (50%) and lower levels (<32%) with other type strains of the P. syringae group, supporting classification within a novel species of the genus Pseudomonas. The strains can be distinguished from species of the P. syringae group by the fatty acid C17:0 cyclo that is present in a low amount (2.5%) and from P. viridiflava by their inability to assimilate d-tartrate and d-sorbitol, and by the formation of red colonies on TTC medium. For this new species, the name Pseudomonas asturiensis sp. nov. is proposed. The type strain is LPPA 221(T) (=LMG 26898(T)=CECT 8095(T)).<br /> (Copyright © 2013 Elsevier GmbH. All rights reserved.)
- Subjects :
- Bacterial Typing Techniques
Cluster Analysis
DNA Gyrase genetics
DNA, Bacterial chemistry
DNA, Bacterial genetics
DNA, Ribosomal chemistry
DNA, Ribosomal genetics
DNA-Directed RNA Polymerases genetics
Fatty Acids analysis
Molecular Sequence Data
Nucleic Acid Hybridization
Phylogeny
Pseudomonas genetics
Pseudomonas physiology
RNA, Ribosomal, 16S genetics
Sequence Analysis, DNA
Sigma Factor genetics
Plant Weeds microbiology
Pseudomonas classification
Pseudomonas isolation & purification
Glycine max microbiology
Subjects
Details
- Language :
- English
- ISSN :
- 1618-0984
- Volume :
- 36
- Issue :
- 5
- Database :
- MEDLINE
- Journal :
- Systematic and applied microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 23727430
- Full Text :
- https://doi.org/10.1016/j.syapm.2013.04.004