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Vesiclepedia: a compendium for extracellular vesicles with continuous community annotation.

Authors :
Kalra H
Simpson RJ
Ji H
Aikawa E
Altevogt P
Askenase P
Bond VC
Borràs FE
Breakefield X
Budnik V
Buzas E
Camussi G
Clayton A
Cocucci E
Falcon-Perez JM
Gabrielsson S
Gho YS
Gupta D
Harsha HC
Hendrix A
Hill AF
Inal JM
Jenster G
Krämer-Albers EM
Lim SK
Llorente A
Lötvall J
Marcilla A
Mincheva-Nilsson L
Nazarenko I
Nieuwland R
Nolte-'t Hoen EN
Pandey A
Patel T
Piper MG
Pluchino S
Prasad TS
Rajendran L
Raposo G
Record M
Reid GE
Sánchez-Madrid F
Schiffelers RM
Siljander P
Stensballe A
Stoorvogel W
Taylor D
Thery C
Valadi H
van Balkom BW
Vázquez J
Vidal M
Wauben MH
Yáñez-Mó M
Zoeller M
Mathivanan S
Source :
PLoS biology [PLoS Biol] 2012; Vol. 10 (12), pp. e1001450. Date of Electronic Publication: 2012 Dec 18.
Publication Year :
2012

Abstract

Extracellular vesicles (EVs) are membraneous vesicles released by a variety of cells into their microenvironment. Recent studies have elucidated the role of EVs in intercellular communication, pathogenesis, drug, vaccine and gene-vector delivery, and as possible reservoirs of biomarkers. These findings have generated immense interest, along with an exponential increase in molecular data pertaining to EVs. Here, we describe Vesiclepedia, a manually curated compendium of molecular data (lipid, RNA, and protein) identified in different classes of EVs from more than 300 independent studies published over the past several years. Even though databases are indispensable resources for the scientific community, recent studies have shown that more than 50% of the databases are not regularly updated. In addition, more than 20% of the database links are inactive. To prevent such database and link decay, we have initiated a continuous community annotation project with the active involvement of EV researchers. The EV research community can set a gold standard in data sharing with Vesiclepedia, which could evolve as a primary resource for the field.<br />Competing Interests: The authors have declared that no competing interests exist.

Details

Language :
English
ISSN :
1545-7885
Volume :
10
Issue :
12
Database :
MEDLINE
Journal :
PLoS biology
Publication Type :
Academic Journal
Accession number :
23271954
Full Text :
https://doi.org/10.1371/journal.pbio.1001450