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Distinct tissue expression profiles of chicken Lpin1-α/β isoforms and the effect of the variation on muscle fiber traits.
- Source :
-
Gene [Gene] 2013 Feb 25; Vol. 515 (2), pp. 281-90. Date of Electronic Publication: 2012 Dec 21. - Publication Year :
- 2013
-
Abstract
- Here we cloned chicken Lpin1-β, conducted the temporal and spatial expression pattern analysis of chicken Lpin1 isoforms by real-time PCR, and studied the 5' flanking region variation and the potential effect. It was found that chicken Lpin1-α and Lpin1-β exhibited distinct tissue expression profiling, with prominent expression in the ovary and muscle tissues respectively. Chicken Lpin1 presented a tissue-specific temporal expression pattern in postnatal development (0-16 weeks). Energy restriction significantly elevated the mRNA level of total Lpin1 by increasing the expression of Lpin1-α and Lpin1-β in a nearly same magnitude. Eight variants/four haplotypes among six breeds were detected from the 5' flanking region of chicken Lpin1, one multiple-nucleotide length polymorphism (g.258M>N) was found and predicted causing the change of 31 transcription factor binding sites including MyoD et al. Both g.258M>N and g. 65C>T variants showed significant association with muscle fiber traits, which suggested one novel role of Lpin1 on muscle fiber development.<br /> (Copyright © 2012 Elsevier B.V. All rights reserved.)
- Subjects :
- 5' Flanking Region
Amino Acid Sequence
Animals
Base Sequence
Caloric Restriction
Chickens growth & development
Chickens metabolism
Gene Expression Regulation, Developmental
Haplotypes
Lipid Metabolism genetics
Liver enzymology
Liver growth & development
Molecular Sequence Data
Muscle, Skeletal enzymology
Muscle, Skeletal growth & development
Organ Specificity
Phenotype
Phosphatidate Phosphatase genetics
Phosphatidate Phosphatase metabolism
Polymorphism, Genetic
Protein Isoforms genetics
Protein Isoforms metabolism
Protein Isoforms physiology
Sequence Analysis, DNA
Sequence Homology, Nucleic Acid
Chickens genetics
Gene Expression Regulation, Enzymologic
Muscle Fibers, Skeletal enzymology
Phosphatidate Phosphatase physiology
Subjects
Details
- Language :
- English
- ISSN :
- 1879-0038
- Volume :
- 515
- Issue :
- 2
- Database :
- MEDLINE
- Journal :
- Gene
- Publication Type :
- Academic Journal
- Accession number :
- 23266642
- Full Text :
- https://doi.org/10.1016/j.gene.2012.11.075