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On identifying the optimal number of population clusters via the deviance information criterion.

Authors :
Gao H
Bryc K
Bustamante CD
Source :
PloS one [PLoS One] 2011; Vol. 6 (6), pp. e21014. Date of Electronic Publication: 2011 Jun 28.
Publication Year :
2011

Abstract

Inferring population structure using bayesian clustering programs often requires a priori specification of the number of subpopulations, K, from which the sample has been drawn. Here, we explore the utility of a common bayesian model selection criterion, the Deviance Information Criterion (DIC), for estimating K. We evaluate the accuracy of DIC, as well as other popular approaches, on datasets generated by coalescent simulations under various demographic scenarios. We find that DIC outperforms competing methods in many genetic contexts, validating its application in assessing population structure.

Details

Language :
English
ISSN :
1932-6203
Volume :
6
Issue :
6
Database :
MEDLINE
Journal :
PloS one
Publication Type :
Academic Journal
Accession number :
21738600
Full Text :
https://doi.org/10.1371/journal.pone.0021014