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The Protein Information Management System (PiMS): a generic tool for any structural biology research laboratory.

Authors :
Morris C
Pajon A
Griffiths SL
Daniel E
Savitsky M
Lin B
Diprose JM
da Silva AW
Pilicheva K
Troshin P
van Niekerk J
Isaacs N
Naismith J
Nave C
Blake R
Wilson KS
Stuart DI
Henrick K
Esnouf RM
Source :
Acta crystallographica. Section D, Biological crystallography [Acta Crystallogr D Biol Crystallogr] 2011 Apr; Vol. 67 (Pt 4), pp. 249-60. Date of Electronic Publication: 2011 Mar 18.
Publication Year :
2011

Abstract

The techniques used in protein production and structural biology have been developing rapidly, but techniques for recording the laboratory information produced have not kept pace. One approach is the development of laboratory information-management systems (LIMS), which typically use a relational database schema to model and store results from a laboratory workflow. The underlying philosophy and implementation of the Protein Information Management System (PiMS), a LIMS development specifically targeted at the flexible and unpredictable workflows of protein-production research laboratories of all scales, is described. PiMS is a web-based Java application that uses either Postgres or Oracle as the underlying relational database-management system. PiMS is available under a free licence to all academic laboratories either for local installation or for use as a managed service.

Details

Language :
English
ISSN :
1399-0047
Volume :
67
Issue :
Pt 4
Database :
MEDLINE
Journal :
Acta crystallographica. Section D, Biological crystallography
Publication Type :
Academic Journal
Accession number :
21460443
Full Text :
https://doi.org/10.1107/S0907444911007943