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Biologically inspired phylogenetic models strongly outperform the no common mechanism model.

Authors :
Huelsenbeck JP
Alfaro ME
Suchard MA
Source :
Systematic biology [Syst Biol] 2011 Mar; Vol. 60 (2), pp. 225-32. Date of Electronic Publication: 2011 Jan 20.
Publication Year :
2011

Abstract

But Tuffley and Steel (1997) introduced a model called No Common Mechanism (NCM), in which characters may-but are not required to-vary their relative rates independently, both within and between branches. Because the independent variation is taken only as a possibility, not as a requirement, NCM would apply to almost any situation, and so may be accepted as realistic. This is useful because Tuffley and Steel also showed that maximum likelihood under NCM selects the same trees as does parsimony. With the realistic NCM in the background, then, most parsimonious trees have greatest power to explain available observations. -Farris (2008).

Details

Language :
English
ISSN :
1076-836X
Volume :
60
Issue :
2
Database :
MEDLINE
Journal :
Systematic biology
Publication Type :
Academic Journal
Accession number :
21252385
Full Text :
https://doi.org/10.1093/sysbio/syq089