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Genetic identification of Southern Ocean octopod samples using mtCOI.

Authors :
Undheim EA
Norman JA
Thoen HH
Fry BG
Source :
Comptes rendus biologies [C R Biol] 2010 May; Vol. 333 (5), pp. 395-404. Date of Electronic Publication: 2010 Mar 16.
Publication Year :
2010

Abstract

East Antarctic octopods were identified by sequencing mtCOI and using four analytical approaches: Neighbor-joining by Kimura-2-Parameter-based distances, character-based, BLAST, and Bayesian Inference of Phylogeny. Although the distance-based analytical approaches identified a high proportion of the sequences (99.5% to genus and 88.1% to species level), these results are undermined by the absence of a clear gap between intra- and interspecific variation. The character-based approach gave highly conflicting results compared to the distance-based methods and failed to identify apomorphic characters for many of the species. While a DNA independent approach is necessary for validation of the method comparisons, crude morphological observations give early support to the distance-based results and indicate extensive range expansions of several species compared to previous studies. Furthermore, the use of distance-based phylogenetic methods nevertheless group specimens into plausible species clades that are highly useful in non-taxonomical or non-systematic studies.<br /> (Copyright 2010 Académie des sciences. Published by Elsevier SAS. All rights reserved.)

Details

Language :
English
ISSN :
1768-3238
Volume :
333
Issue :
5
Database :
MEDLINE
Journal :
Comptes rendus biologies
Publication Type :
Academic Journal
Accession number :
20451881
Full Text :
https://doi.org/10.1016/j.crvi.2010.02.002