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[Protein structure prediction from analogy. I. New database of spatially similar and dissimilar structures of protein domains for testing and optimization of prediction methods].

Authors :
Lobanov MIu
Bogatyreva NS
Ivankov DN
Finkel'shteĭn AV
Source :
Molekuliarnaia biologiia [Mol Biol (Mosk)] 2009 Jul-Aug; Vol. 43 (4), pp. 722-32.
Publication Year :
2009

Abstract

The paper describes creation and analysis of a database 3Dfold_test. This database consists of a large set of pairs of spatially-similar structures of protein domains and of an accompanying, much larger control set of "decoys", i.e., spatially-dissimilar protein structures, having approximately the same size and compactness as each member of a pair of spatially-similar proteins. The database 3Dfold_test can be found at the site http://phys.protres.ru/resources/prediction analogy/3Dfold/.

Details

Language :
Russian
ISSN :
0026-8984
Volume :
43
Issue :
4
Database :
MEDLINE
Journal :
Molekuliarnaia biologiia
Publication Type :
Academic Journal
Accession number :
19807036