Back to Search Start Over

[New program PSI protein classifier automatizes the PSI-BLAST results analysis].

Authors :
Naumov DG
Karreras M
Source :
Molekuliarnaia biologiia [Mol Biol (Mosk)] 2009 Jul-Aug; Vol. 43 (4), pp. 709-21.
Publication Year :
2009

Abstract

PSI Protein Classifier is a new program that allows to summarize the consecutive and independent PSI-BLAST iteration results. The technical opportunities of the program are explained. Two examples of the PSI Protein Classifier application are given. Iterative screening of the protein database allowed to reveal feasible evolutionary relationship among GH5, GH13, GH27, GH31, GH36, GH66, GH101, and GH114 families of glycoside hydrolases. Family GH31 is divided into 38 subfamilies on the basis of statistically significant sequence similarity analysis (E-value analysis).

Details

Language :
Russian
ISSN :
0026-8984
Volume :
43
Issue :
4
Database :
MEDLINE
Journal :
Molekuliarnaia biologiia
Publication Type :
Academic Journal
Accession number :
19807035