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Isolation, nucleotide identification and tissue expression of three novel ovine genes-SLC25A4, SLC25A5 and SLC25A6.
- Source :
-
Molecular biology reports [Mol Biol Rep] 2010 Jul; Vol. 37 (6), pp. 2743-8. Date of Electronic Publication: 2009 Sep 11. - Publication Year :
- 2010
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Abstract
- The complete coding sequences of three of sheep genes SLC25A4, SLC25A5 and SLC25A6 were firstly amplified using the reverse transcriptase polymerase chain reaction (RT-PCR) according to the conserved sequence information of the cattle or other mammals and known highly homologous sheep ESTs. Sheep SLC25A4, SLC25A5 and SLC25A6 genes encode three corresponding proteins of 298 amino acids which contain the identically conserved putative mitochondrial carrier protein domain. Sheep SLC25A4 protein has high homology with the SLC25A4 proteins of six species-cattle (99%), human (95%), rat (95%), mouse (94%), dog (94%) and chicken (89%). Sheep SLC25A5 protein has high identity with the SLC25A5 proteins of five species-cattle (100%), dog (99%), mouse (98%), rat (98%) and human (98%). Sheep SLC25A6 protein also has high homology with the SLC25A6 proteins of four species-cattle (99%), human (97%), pig (97%) and chicken (93%). The phylogenetic tree analysis demonstrated that sheep SLC25A4, SLC25A5 and SLC25A6 proteins share a common ancestor. Moreover, SLC25A4, SLC25A5 and SLC25A6 proteins present stronger interaction each other. The tissue expression analysis indicated that sheep SLC25A4, SLC25A5 and SLC25A6 genes were expressed in a range of tissues including leg muscle, kidney, skin, longissimus dorsi muscle, spleen, heart and liver. Our experiment is the first to provide the primary foundation for further insight into these three sheep genes.
- Subjects :
- Adenine Nucleotide Translocator 1 chemistry
Adenine Nucleotide Translocator 1 metabolism
Adenine Nucleotide Translocator 2 chemistry
Adenine Nucleotide Translocator 2 metabolism
Adenine Nucleotide Translocator 3 chemistry
Adenine Nucleotide Translocator 3 metabolism
Animals
Base Sequence
Gene Expression Regulation
Molecular Sequence Data
Phylogeny
Protein Binding
Protein Structure, Secondary
Protein Structure, Tertiary
Reverse Transcriptase Polymerase Chain Reaction
Sequence Analysis, DNA
Adenine Nucleotide Translocator 1 genetics
Adenine Nucleotide Translocator 2 genetics
Adenine Nucleotide Translocator 3 genetics
Gene Expression Profiling
Sheep genetics
Subjects
Details
- Language :
- English
- ISSN :
- 1573-4978
- Volume :
- 37
- Issue :
- 6
- Database :
- MEDLINE
- Journal :
- Molecular biology reports
- Publication Type :
- Academic Journal
- Accession number :
- 19763879
- Full Text :
- https://doi.org/10.1007/s11033-009-9812-z