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Very short peptides with stable folds: building on the interrelationship of Trp/Trp, Trp/cation, and Trp/backbone-amide interaction geometries.
- Source :
-
Proteins [Proteins] 2009 May 01; Vol. 75 (2), pp. 308-22. - Publication Year :
- 2009
-
Abstract
- By combining a favorable turn sequence with a turn flanking Trp/Trp interaction and a C-terminal H-bonding interaction between a backbone amide and an i-2 Trp ring, a particularly stable (DeltaG(U) > 7 kJ/mol) truncated hairpin, Ac-WI-(D-Pro-D-Asn)-KWTG-NH(2), results. In this construct and others with a W-(4-residue turn)-W motif in severely truncated hairpins, the C-terminal Trp is the edge residue in a well-defined face-to-edge (FtE) aryl/aryl interaction. Longer hairpins and those with six-residue turns retain the reversed "edge-to-face" (EtF) Trp/Trp geometry first observed for the trpzip peptides. Mutational studies suggest that the W-(4-residue turn)-W interaction provides at least 3 kJ/mol of stabilization in excess of that due to the greater beta-propensity of Trp. The pi-cation, and Trp/Gly-H(N) interactions have been defined. The latter can give rise to >3 ppm upfield shifts for the Gly-H(N) in -WX(n)G- units both in turns (n = 2) and at the C-termini (n = 1) of hairpins. Terminal YTG units result in somewhat smaller shifts (extrapolated to 2 ppm for 100% folding). In peptides with both the EtF and FtE W/W interaction geometries, Trp to Tyr mutations indicate that Trp is the preferred "face" residue in aryl/aryl pairings, presumably because of its greater pi basicity.
- Subjects :
- Amides chemistry
Cations chemistry
Hydrogen Bonding
Indoles chemistry
Indoles metabolism
Mutant Proteins chemistry
Mutant Proteins genetics
Mutant Proteins metabolism
Peptides genetics
Point Mutation
Protein Folding
Protein Stability
Protein Structure, Secondary
Thermodynamics
Transition Temperature
Tryptophan chemistry
Amides metabolism
Cations metabolism
Peptides chemistry
Peptides metabolism
Tryptophan metabolism
Subjects
Details
- Language :
- English
- ISSN :
- 1097-0134
- Volume :
- 75
- Issue :
- 2
- Database :
- MEDLINE
- Journal :
- Proteins
- Publication Type :
- Academic Journal
- Accession number :
- 18831035
- Full Text :
- https://doi.org/10.1002/prot.22240