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Overlapping protein-encoding genes in Pseudomonas fluorescens Pf0-1.
- Source :
-
PLoS genetics [PLoS Genet] 2008 Jun 13; Vol. 4 (6), pp. e1000094. Date of Electronic Publication: 2008 Jun 13. - Publication Year :
- 2008
-
Abstract
- The annotated genome sequences of prokaryotes seldom include overlapping genes encoded opposite each other by the same stretch of DNA. However, antisense transcription is becoming recognized as a widespread phenomenon in eukaryotes, and examples have been linked to important biological processes. Pseudomonas fluorescens inhabits aquatic and terrestrial environments, and can be regarded as an environmental generalist. The genetic basis for this ecological success is not well understood. In a previous search for soil-induced genes in P. fluorescens Pf0-1, ten antisense genes were discovered. These were termed 'cryptic' genes, as they had escaped detection by gene-hunting algorithms, and lacked easily recognizable promoters. In this communication, we designate such genes as 'non-predicted' or 'hidden'. Using reverse transcription PCR, we show that at each of six non-predicted gene loci chosen for study, transcription occurs from both 'sense' and 'antisense' DNA strands. Further, at least one of these hidden antisense genes, iiv14, encodes a protein, as does the sense transcript, both identified by poly-histidine tags on the C-terminus of the proteins. Mutational and complementation studies showed that this novel antisense gene was important for efficient colonization of soil, and multiple copies in the wildtype host improved the speed of soil colonization. Introduction of a stop codon early in the gene eliminated complementation, further implicating the protein in colonization of soil. We therefore designate iiv14 "cosA". These data suggest that, as is the case with eukaryotes, some bacterial genomes are more densely coded than currently recognized.<br />Competing Interests: The authors have declared that no competing interests exist.
- Subjects :
- Codon, Nonsense genetics
Gene Dosage
Genetic Complementation Test
Genome, Bacterial
Protein Biosynthesis
Pseudomonas fluorescens growth & development
Pseudomonas fluorescens metabolism
RNA, Antisense genetics
Soil Microbiology
Transcription Initiation Site
Transcription, Genetic
Bacterial Proteins genetics
Genes, Overlapping
Pseudomonas fluorescens genetics
Subjects
Details
- Language :
- English
- ISSN :
- 1553-7404
- Volume :
- 4
- Issue :
- 6
- Database :
- MEDLINE
- Journal :
- PLoS genetics
- Publication Type :
- Academic Journal
- Accession number :
- 18551168
- Full Text :
- https://doi.org/10.1371/journal.pgen.1000094