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Structural, kinetic, and theoretical studies on models of the zinc-containing phosphodiesterase active center: medium-dependent reaction mechanisms.
- Source :
-
Chemistry (Weinheim an der Bergstrasse, Germany) [Chemistry] 2007; Vol. 13 (32), pp. 9093-106. - Publication Year :
- 2007
-
Abstract
- Dinuclear zinc(II) complexes [Zn(2)(bpmp)(mu-OH)](ClO(4))(2) (1) and [Zn(2)(bpmp)(H(2)O)(2)](ClO(4))(3) (2) (H-BPMP=2,6-bis[bis(2-pyridylmethyl)aminomethyl]-4-methylphenol) have been synthesized, structurally characterized, and pH-driven changes in metal coordination observed. The transesterification reaction of 2-hydroxypropyl p-nitrophenyl phosphate (HPNP) in the presence of the two complexes was studied both in a water/DMSO (70:30) mixture and in DMSO. Complex 2 was not reactive whereas for 1 considerable rate enhancement of the spontaneous hydrolysis reaction was observed. A detailed mechanistic investigation by kinetic studies, spectroscopic measurements ((1)H, (31)P NMR spectroscopy), and ESI-MS analysis in conjunction with ab initio calculations was performed on 1. Based on these results, two medium-dependent mechanisms are presented and an unusual bridging phosphate intermediate is proposed for the process in DMSO.
- Subjects :
- Binding Sites
Crystallography, X-Ray
Enzyme Activation
Hydrogen-Ion Concentration
Kinetics
Magnetic Resonance Spectroscopy methods
Magnetic Resonance Spectroscopy standards
Models, Molecular
Molecular Structure
Organometallic Compounds chemical synthesis
Organometallic Compounds chemistry
Reference Standards
Sensitivity and Specificity
Spectrometry, Mass, Electrospray Ionization methods
Spectrophotometry, Ultraviolet methods
Stereoisomerism
Models, Biological
Phosphoric Diester Hydrolases chemistry
Ribonucleases chemistry
Zinc chemistry
Subjects
Details
- Language :
- English
- ISSN :
- 0947-6539
- Volume :
- 13
- Issue :
- 32
- Database :
- MEDLINE
- Journal :
- Chemistry (Weinheim an der Bergstrasse, Germany)
- Publication Type :
- Academic Journal
- Accession number :
- 17680569
- Full Text :
- https://doi.org/10.1002/chem.200700104