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pIQPNNI: parallel reconstruction of large maximum likelihood phylogenies.

Authors :
Minh BQ
Vinh le S
von Haeseler A
Schmidt HA
Source :
Bioinformatics (Oxford, England) [Bioinformatics] 2005 Oct 01; Vol. 21 (19), pp. 3794-6. Date of Electronic Publication: 2005 Jul 26.
Publication Year :
2005

Abstract

Summary: IQPNNI is a program to infer maximum-likelihood phylogenetic trees from DNA or protein data with a large number of sequences. We present an improved and MPI-parallel implementation showing very good scaling and speed-up behavior.

Subjects

Subjects :
Amino Acid Sequence
Animals
Base Sequence
Humans
Likelihood Functions
Molecular Sequence Data
Algorithms
Computing Methodologies
Evolution, Molecular
Models, Genetic
Phylogeny
Sequence Alignment methods
Sequence Analysis, DNA methods
Sequence Analysis, Protein methods

Details

Language :
English
ISSN :
1367-4803
Volume :
21
Issue :
19
Database :
MEDLINE
Journal :
Bioinformatics (Oxford, England)
Publication Type :
Academic Journal
Accession number :
16046495
Full Text :
https://doi.org/10.1093/bioinformatics/bti594
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