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CrossChip: a system supporting comparative analysis of different generations of Affymetrix arrays.
- Source :
-
Bioinformatics (Oxford, England) [Bioinformatics] 2005 May 01; Vol. 21 (9), pp. 2116-7. Date of Electronic Publication: 2005 Jan 31. - Publication Year :
- 2005
-
Abstract
- Summary: To increase compatibility between different generations of Affymetrix GeneChip arrays, we propose a method of filtering probes based on their sequences. Our method is implemented as a web-based service for downloading necessary materials for converting the raw data files (*.CEL) for comparative analysis. The user can specify the appropriate level of filtering by setting the criteria for the minimum overlap length between probe sequences and the minimum number of usable probe pairs per probe set. Our website supports a within-species comparison for human and mouse GeneChip arrays.<br />Availability: http://www.crosschip.org
- Subjects :
- Gene Expression Profiling instrumentation
Information Storage and Retrieval methods
Oligonucleotide Array Sequence Analysis instrumentation
Sequence Alignment instrumentation
Sequence Analysis, DNA instrumentation
Algorithms
DNA Probes genetics
Gene Expression Profiling methods
Oligonucleotide Array Sequence Analysis methods
Sequence Alignment methods
Sequence Analysis, DNA methods
Software
Subjects
Details
- Language :
- English
- ISSN :
- 1367-4803
- Volume :
- 21
- Issue :
- 9
- Database :
- MEDLINE
- Journal :
- Bioinformatics (Oxford, England)
- Publication Type :
- Academic Journal
- Accession number :
- 15684227
- Full Text :
- https://doi.org/10.1093/bioinformatics/bti288