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WormBase: a multi-species resource for nematode biology and genomics.

Authors :
Harris TW
Chen N
Cunningham F
Tello-Ruiz M
Antoshechkin I
Bastiani C
Bieri T
Blasiar D
Bradnam K
Chan J
Chen CK
Chen WJ
Davis P
Kenny E
Kishore R
Lawson D
Lee R
Muller HM
Nakamura C
Ozersky P
Petcherski A
Rogers A
Sabo A
Schwarz EM
Van Auken K
Wang Q
Durbin R
Spieth J
Sternberg PW
Stein LD
Source :
Nucleic acids research [Nucleic Acids Res] 2004 Jan 01; Vol. 32 (Database issue), pp. D411-7.
Publication Year :
2004

Abstract

WormBase (http://www.wormbase.org/) is the central data repository for information about Caenorhabditis elegans and related nematodes. As a model organism database, WormBase extends beyond the genomic sequence, integrating experimental results with extensively annotated views of the genome. The WormBase Consortium continues to expand the biological scope and utility of WormBase with the inclusion of large-scale genomic analyses, through active data and literature curation, through new analysis and visualization tools, and through refinement of the user interface. Over the past year, the nearly complete genomic sequence and comparative analyses of the closely related species Caenorhabditis briggsae have been integrated into WormBase, including gene predictions, ortholog assignments and a new synteny viewer to display the relationships between the two species. Extensive site-wide refinement of the user interface now provides quick access to the most frequently accessed resources and a consistent browsing experience across the site. Unified single-page views now provide complete summaries of commonly accessed entries like genes. These advances continue to increase the utility of WormBase for C.elegans researchers, as well as for those researchers exploring problems in functional and comparative genomics in the context of a powerful genetic system.

Details

Language :
English
ISSN :
1362-4962
Volume :
32
Issue :
Database issue
Database :
MEDLINE
Journal :
Nucleic acids research
Publication Type :
Academic Journal
Accession number :
14681445
Full Text :
https://doi.org/10.1093/nar/gkh066