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Comparison of the refined crystal structures of wild-type (1.34 A) flavodoxin from Desulfovibrio vulgaris and the S35C mutant (1.44 A) at 100 K.
- Source :
-
Acta crystallographica. Section D, Biological crystallography [Acta Crystallogr D Biol Crystallogr] 2002 Oct; Vol. 58 (Pt 10 Pt 2), pp. 1787-92. Date of Electronic Publication: 2002 Sep 28. - Publication Year :
- 2002
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Abstract
- Engineered flavodoxins in which a surface residue has been replaced by an exposed cysteine are useful modules to link multi-domain redox proteins obtained by gene fusion to electrode surfaces. In the present work, the crystal structure of the S35C mutant of Desulfovibrio vulgaris flavodoxin in the oxidized state has been determined and compared with a refined structure of the wild type (wt). The structure of wt flavodoxin (space group P4(3)2(1)2, unit-cell parameters a = 50.52, b = 50.52, c = 138.59 A) at 1.34 A resolution has been refined to R = 0.16 and R(free) = 0.18. The structure of the S35C mutant (space group P4(3)2(1)2, unit-cell parameters a = 50.55, b = 50.55, c = 138.39 A) at 1.44 A resolution has been refined to R = 0.13 and R(free) = 0.16. Data sets were collected with synchrotron radiation at 100 K. In the S35C mutant, the Cys35 thiol group points towards a hydrophobic region, whilst in the wt the Ser35 hydroxyl group points towards a more polar region. The solvent exposure of Cys35 is 43 A(2), of which 8 A(2) is for the sulfur. This is comparable to the exposure of 48 A(2) found for the wt Ser35, where that of the hydroxyl oxygen is also 8 A(2).
- Subjects :
- Amino Acid Sequence
Amino Acid Substitution
Binding Sites
Crystallography, X-Ray methods
Flavins metabolism
Flavodoxin metabolism
Hydrogen Bonding
Models, Molecular
Oxidation-Reduction
Protein Conformation
Protein Structure, Secondary
Recombinant Proteins chemistry
Recombinant Proteins metabolism
Desulfovibrio vulgaris chemistry
Flavodoxin chemistry
Flavodoxin genetics
Subjects
Details
- Language :
- English
- ISSN :
- 0907-4449
- Volume :
- 58
- Issue :
- Pt 10 Pt 2
- Database :
- MEDLINE
- Journal :
- Acta crystallographica. Section D, Biological crystallography
- Publication Type :
- Academic Journal
- Accession number :
- 12351822
- Full Text :
- https://doi.org/10.1107/s0907444902012234