An initial assessment of sampling procedures for juvenile pallid sturgeon in the Missouri River downstream of Fort Randall Dam, South Dakota and Nebraska.

We compared the effectiveness of passive gill nets, hoop nets, set lines, and drifted trammel nets, towed beam trawls and otter trawls to develop criteria to best determine the mean catch per unit effort (CPUE) for juvenile pallid sturgeon ( Scaphirhynchus albus) based on selectivity and seasonal efficiency in various habitats of the Missouri River downstream of Fort Randall Dam, South Dakota. Sampling occurred from April to November in 2003 and 2004 and from March to November in 2005. We captured 29 juvenile pallid sturgeon in a total of 498 overnight gill net sets, 55 in 870 drifted trammel nets, 19 on 1683 set lines, and six in 166 otter trawl tows. No pallid sturgeon were captured in 515 beam trawl tows or 520 overnight hoop net sets. Seasonal trends in mean CPUE were found and the relative precision was the greatest in October and November for gill nets, in August for trammel nets, in April for set lines, and in October for otter trawls. A higher proportion of pallid sturgeon captures for gill nets were in the inside bend macrohabitat generally associated with lower water velocities, trammel nets over sand substrate and in the outside bend macrohabitat typically associated with higher water velocities and greater depths, set lines in lower water velocities, and otter trawls in depths >2.5 m and over sand substrate. Although we found trends among seasons and habitats for gill nets, trammel nets, set lines, and otter trawls, the catch rates were low and annual point estimates of relative abundance are not adequate to detect changes in relative abundance of juvenile pallid sturgeon in this reach of the Missouri River. Independently, gill nets, trammel nets, and otter trawls likely captured the size structure of the population of pallid sturgeon in the Missouri River downstream of Fort Randall Dam. Based on our results, a standardized protocol can now be established to systematically monitor juvenile pallid sturgeon, an essential element for determining responses to recovery efforts in the Missouri River. [ABSTRACT FROM AUTHOR]