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Overcoming the High Error Rate of Composite DNA Letters‐Based Digital Storage through Soft‐Decision Decoding.

Authors :
Xu, Yaping
Ding, Lulu
Wu, Shigang
Ruan, Jue
Source :
Advanced Science. 8/14/2024, Vol. 11 Issue 30, p1-9. 9p.
Publication Year :
2024

Abstract

Composite DNA letters, by merging all four DNA nucleotides in specified ratios, offer a pathway to substantially increase the logical density of DNA digital storage (DDS) systems. However, these letters are susceptible to nucleotide errors and sampling bias, leading to a high letter error rate, which complicates precise data retrieval and augments reading expenses. To address this, Derrick‐cp is introduced as an innovative soft‐decision decoding algorithm tailored for DDS utilizing composite letters. Derrick‐cp capitalizes on the distinctive error sensitivities among letters to accurately predict and rectify letter errors, thus enhancing the error‐correcting performance of Reed‐Solomon codes beyond traditional hard‐decision decoding limits. Through comparative analyses in the existing dataset and simulated experiments, Derrick‐cp's superiority is validated, notably halving the sequencing depth requirement and slashing costs by up to 22% against conventional hard‐decision strategies. This advancement signals Derrick‐cp's significant role in elevating both the precision and cost‐efficiency of composite letter‐based DDS. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
21983844
Volume :
11
Issue :
30
Database :
Academic Search Index
Journal :
Advanced Science
Publication Type :
Academic Journal
Accession number :
179740490
Full Text :
https://doi.org/10.1002/advs.202402951