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MetaboLink: a web application for streamlined processing and analysis of large-scale untargeted metabolomics data.

Authors :
Mendes, Ana
Havelund, Jesper Foged
Lemvig, Jonas
Schwämmle, Veit
Færgeman, Nils J
Source :
Bioinformatics. Jul2024, Vol. 40 Issue 7, p1-3. 3p.
Publication Year :
2024

Abstract

Motivation The post-processing and analysis of large-scale untargeted metabolomics data face significant challenges due to the intricate nature of correction, filtration, imputation, and normalization steps. Manual execution across various applications often leads to inefficiencies, human-induced errors, and inconsistencies within the workflow. Results Addressing these issues, we introduce MetaboLink, a novel web application designed to process LC-MS metabolomics datasets combining established methodologies and offering flexibility and ease of implementation. It offers visualization options for data interpretation, an interface for statistical testing, and integration with PolySTest for further tests and with VSClust for clustering analysis. Availability and implementation Fully functional tool is publicly available at https://computproteomics.bmb.sdu.dk/Metabolomics/. The source code is available at https://github.com/anitamnd/MetaboLink and a detailed description of the app can be found at https://github.com/anitamnd/MetaboLink/wiki. A tutorial video can be found at https://youtu.be/ZM6j10S6Z8Q. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
13674803
Volume :
40
Issue :
7
Database :
Academic Search Index
Journal :
Bioinformatics
Publication Type :
Academic Journal
Accession number :
178887817
Full Text :
https://doi.org/10.1093/bioinformatics/btae459